Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   N5O88_RS05080 Genome accession   NZ_CP104583
Coordinates   1065650..1067242 (-) Length   530 a.a.
NCBI ID   WP_279532295.1    Uniprot ID   -
Organism   Pseudomonas sp. GD03721     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060650..1072242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O88_RS05055 (N5O88_05055) pilV 1061526..1061990 (-) 465 WP_279532290.1 type IV pilus modification protein PilV -
  N5O88_RS05060 (N5O88_05060) - 1061991..1062461 (-) 471 WP_279532291.1 GspH/FimT family pseudopilin -
  N5O88_RS05065 (N5O88_05065) - 1062558..1063085 (-) 528 WP_279532292.1 GspH/FimT family pseudopilin -
  N5O88_RS05070 (N5O88_05070) thiO 1063188..1064291 (+) 1104 WP_279532293.1 glycine oxidase ThiO -
  N5O88_RS05075 (N5O88_05075) pilR 1064307..1065647 (-) 1341 WP_279532294.1 sigma-54-dependent transcriptional regulator Regulator
  N5O88_RS05080 (N5O88_05080) pilS 1065650..1067242 (-) 1593 WP_279532295.1 two-component system sensor histidine kinase NtrB Regulator
  N5O88_RS05085 (N5O88_05085) - 1067232..1067468 (-) 237 WP_279532296.1 PP0621 family protein -
  N5O88_RS05090 (N5O88_05090) - 1068593..1069585 (-) 993 WP_279532297.1 outer membrane protein assembly factor BamD -
  N5O88_RS05095 (N5O88_05095) rluD 1069724..1070698 (+) 975 WP_279532298.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5O88_RS05100 (N5O88_05100) pgeF 1070695..1071426 (+) 732 WP_279532299.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59008.15 Da        Isoelectric Point: 8.7440

>NTDB_id=730734 N5O88_RS05080 WP_279532295.1 1065650..1067242(-) (pilS) [Pseudomonas sp. GD03721]
MNADSSTPSGTQARRILRLYHLYRLSIGLALVLLISSNLDEQFFDVVHIELFRTGSWVYLILNIFIAVLVHRPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRVGLLIAAIAAIALIYLTFYLSLSHPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQISETLAEKRAADVANLEELNAQILQRMRTGILVLDTQHRVLLANQGATQLLGRGELTGKIID
PHCPELVKRLQQWLHNPTLRPESLQAQVDGPVLQPSFISLQRDGQQHILVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPAD
RQIHLETQGGSLQTRMDPHQLNQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDPVSDLPVLEILDDGPGVPPEQEQHIFEP
FYTTENKGTGLGLYISRELCQSNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=730734 N5O88_RS05080 WP_279532295.1 1065650..1067242(-) (pilS) [Pseudomonas sp. GD03721]
GTGAACGCTGATAGCAGCACGCCGAGCGGCACTCAGGCTCGCCGGATTCTCCGGCTTTACCATCTTTATCGCCTGAGTAT
CGGCCTGGCCCTGGTTCTGCTGATTTCCAGCAACCTCGACGAGCAGTTTTTCGATGTCGTGCATATCGAGCTGTTTCGTA
CAGGCAGTTGGGTCTACCTGATCCTCAACATCTTCATCGCCGTGCTGGTCCATCGGCCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTGATCTTTCTCTCGGCCCTGTTCTATGCAGCCGGCGGTACACCCAGCGGTATCGGTAACCT
GCTGGTGGTCGCTGTAGCCATCGCCAACATCCTGCTGCGCGGCCGCGTTGGCCTGTTGATCGCCGCCATCGCCGCGATAG
CGCTGATCTACCTGACCTTCTACCTCAGTCTCAGCCACCCGGCCGCCGCTGCCCAATACGTGCAGGCCGGCGCCCTCGGC
GCGCTGTGTTTCGCTGGCGCGTTATTCATCCAGGGCATCACCCGACGCCTGCAGATCAGTGAAACCCTGGCCGAAAAGCG
TGCAGCCGACGTAGCCAACCTCGAAGAGCTCAATGCGCAGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACA
CCCAACACCGCGTGCTGCTGGCCAATCAGGGGGCAACGCAGCTACTGGGCCGTGGCGAACTGACCGGCAAGATCATCGAC
CCACACTGCCCCGAGCTGGTCAAACGCCTGCAGCAGTGGCTGCACAACCCGACGCTGCGCCCGGAAAGCCTGCAGGCGCA
GGTCGATGGCCCGGTGTTGCAACCGAGCTTCATCTCCCTGCAACGCGACGGCCAGCAACATATTCTGGTGTTTCTCGATG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGCCTCGCTGGGCCGCCTGACCGCCGGCATCGCCCACGAA
ATTCGCAACCCGCTCGGCGCCATCAGCCATGCCGCGCAGTTGTTGCAGGAATCGGAAGACCTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATTCAGGATCACTCCAAACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTCTCGCGCCGGCGCC
AGGCCGAACCGCAACTGCTCGACCTGAAATACTGGCTACACCGCTTCGCCAGCGAATTTCGCAGCTCGGCACCGGCTGAC
CGGCAGATCCACCTGGAAACCCAGGGCGGCAGCCTGCAGACGCGCATGGATCCACACCAGTTGAACCAGGTACTGACCAA
TCTGGTACAAAACGGCCTGCGCTACAGCGCCCAGAAGCACCGGCTCGGCCAGGTCTGGCTACGCCTGTTTCGCGACCCGG
TCAGCGATCTGCCGGTTCTGGAGATTCTCGACGATGGCCCCGGCGTGCCGCCCGAACAGGAGCAGCACATCTTCGAGCCC
TTCTACACCACCGAGAACAAAGGCACCGGCCTCGGCCTGTATATCTCCCGTGAGCTGTGCCAGAGCAACCAAGCCCGCCT
GGACTATAAACCTCGCGAAGGGGGCGGCAGTTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.358

100

0.674