Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5O88_RS05075 Genome accession   NZ_CP104583
Coordinates   1064307..1065647 (-) Length   446 a.a.
NCBI ID   WP_279532294.1    Uniprot ID   -
Organism   Pseudomonas sp. GD03721     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059307..1070647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O88_RS05045 (N5O88_05045) - 1060082..1060555 (-) 474 WP_279532288.1 pilus assembly PilX family protein -
  N5O88_RS05050 (N5O88_05050) - 1060552..1061529 (-) 978 WP_279532289.1 PilW family protein -
  N5O88_RS05055 (N5O88_05055) pilV 1061526..1061990 (-) 465 WP_279532290.1 type IV pilus modification protein PilV -
  N5O88_RS05060 (N5O88_05060) - 1061991..1062461 (-) 471 WP_279532291.1 GspH/FimT family pseudopilin -
  N5O88_RS05065 (N5O88_05065) - 1062558..1063085 (-) 528 WP_279532292.1 GspH/FimT family pseudopilin -
  N5O88_RS05070 (N5O88_05070) thiO 1063188..1064291 (+) 1104 WP_279532293.1 glycine oxidase ThiO -
  N5O88_RS05075 (N5O88_05075) pilR 1064307..1065647 (-) 1341 WP_279532294.1 sigma-54-dependent transcriptional regulator Regulator
  N5O88_RS05080 (N5O88_05080) pilS 1065650..1067242 (-) 1593 WP_279532295.1 two-component system sensor histidine kinase NtrB Regulator
  N5O88_RS05085 (N5O88_05085) - 1067232..1067468 (-) 237 WP_279532296.1 PP0621 family protein -
  N5O88_RS05090 (N5O88_05090) - 1068593..1069585 (-) 993 WP_279532297.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49754.09 Da        Isoelectric Point: 5.8172

>NTDB_id=730733 N5O88_RS05075 WP_279532294.1 1064307..1065647(-) (pilR) [Pseudomonas sp. GD03721]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVATALRIRAPEGEEPPVDSRLLGDSPPMKALRKQILKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRVEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLANAM
LARLADGTGLAAAKLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDQITPSDLRLADASGPSNEGGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=730733 N5O88_RS05075 WP_279532294.1 1064307..1065647(-) (pilR) [Pseudomonas sp. GD03721]
ATGAACCGTCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGTGAGCTGCTGGAAATCACCCTCGGACGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCGCGTGAATGGCTGGCGCGCGAGCCATTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGATGGCACCGGCCTGGATCTGGTGCAGCACATTCAACAACGTCATCCACAGGTACCCGTGGCGATG
ATTACCGCCTACGGCAGCCTGGACACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTTCTGACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTCGCCACGGCCCTGCGCATTCGCGCGCCCGAGGGCGAGGAACCCCCGGTCGACAGCC
GCCTGCTCGGCGATTCGCCACCGATGAAAGCGCTGCGCAAGCAGATCCTGAAACTTTCACGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCGGGTAGCGGCAAGGAACTGGTGGCCCGTCTGATCCATGAGCAGGGTCCGCGCGTCGAGCAGCCCTT
TGTTCCGGTCAACTGCGGCGCGATTCCCTCGGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAATGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
CTGCCGATGCAGGTCAAACTGCTGCGAGCCATCCAGGAAAAGGCCGTGCGCGCCGTCGGTGGCCAGCAGGAAGTGGTGGT
GGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTCGCCGCCGAAGTGGCCGCCGGCCGCTTCCGTCAGGACCTCTACT
ACCGCCTCAACGTCATCGAACTGCGCGTCCCGCCGCTGCGCGAGCGCCGCGAAGACATCGCACAACTGGCCAATGCGATG
CTCGCTCGCCTGGCCGACGGCACCGGCCTTGCCGCTGCCAAACTGCACCCCGATGCCCTGGAAAAGCTCAAGAACTACCG
TTTCCCCGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGTGCCTATACCCTCTGCGAAGACGACCAGATCACGCCCA
GCGACCTGCGCCTGGCCGACGCCAGTGGCCCCAGCAACGAAGGCGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAACTGATCATGCAGGCACTGGAAGAAACCCGCTGGAACCGCACGGCCGCGGCTCA
GCGCCTGGGCCTGACCTTCCGTTCGATGCGCTATCGACTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.462

100

0.895
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511
  luxO Vibrio cholerae strain A1552

38.341

100

0.383