Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   N5O87_RS20050 Genome accession   NZ_CP104582
Coordinates   4179434..4179841 (-) Length   135 a.a.
NCBI ID   WP_003458788.1    Uniprot ID   W6QSF7
Organism   Pseudomonas sp. GD03919     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4174434..4184841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O87_RS20030 (N5O87_20020) - 4175401..4176261 (-) 861 WP_279533205.1 protein-glutamate O-methyltransferase -
  N5O87_RS20035 (N5O87_20025) - 4176322..4178358 (-) 2037 WP_279531465.1 methyl-accepting chemotaxis protein -
  N5O87_RS20040 (N5O87_20030) - 4178443..4178976 (-) 534 WP_279531466.1 chemotaxis protein CheW -
  N5O87_RS20045 (N5O87_20035) pilH 4179022..4179387 (-) 366 WP_003458790.1 twitching motility response regulator PilH -
  N5O87_RS20050 (N5O87_20040) pilG 4179434..4179841 (-) 408 WP_003458788.1 twitching motility response regulator PilG Regulator
  N5O87_RS20055 (N5O87_20045) gshB 4180083..4181039 (+) 957 WP_279531467.1 glutathione synthase -
  N5O87_RS20060 (N5O87_20050) - 4181128..4182024 (+) 897 WP_279531468.1 energy transducer TonB -
  N5O87_RS20065 (N5O87_20055) - 4182119..4182688 (+) 570 WP_279531469.1 YqgE/AlgH family protein -
  N5O87_RS20070 (N5O87_20060) ruvX 4182685..4183122 (+) 438 WP_279533206.1 Holliday junction resolvase RuvX -
  N5O87_RS20075 (N5O87_20065) pyrR 4183269..4183772 (+) 504 WP_279531470.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  N5O87_RS20080 (N5O87_20070) - 4183784..4184791 (+) 1008 WP_011920651.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14771.13 Da        Isoelectric Point: 6.7123

>NTDB_id=730721 N5O87_RS20050 WP_003458788.1 4179434..4179841(-) (pilG) [Pseudomonas sp. GD03919]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKAHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=730721 N5O87_RS20050 WP_003458788.1 4179434..4179841(-) (pilG) [Pseudomonas sp. GD03919]
ATGGAACAGCATTCCGAGGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCTGAAACTCTGCT
GAAAAAAGTGGGCTGTGATGTCATCACTGCGGTCGATGGCTTCGATGCCCTGGCCAAGATTGCCGACACTCACCCCAGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGATGGGTATCAGACCTGTGCCCTGATCAAGAACAACAGTGCTTTCAAG
TCCACGCCAGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGCTCCGATCAGTA
CCTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTCGGTGCGATCAAGGCTCACGTGCCCGACTTCACCCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6QSF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

92.593

0.704
  vicR Streptococcus mutans UA159

42.857

93.333

0.4