Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GZK95_RS00145 Genome accession   NZ_AP019654
Coordinates   32976..34499 (+) Length   507 a.a.
NCBI ID   WP_075714847.1    Uniprot ID   -
Organism   Vibrio panuliri strain JCM 19500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 27976..39499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS00130 ilvE 29552..30496 (-) 945 WP_075707134.1 branched-chain-amino-acid transaminase -
  GZK95_RS00135 ilvM 30509..30793 (-) 285 WP_075707132.1 acetolactate synthase 2 small subunit -
  GZK95_RS00140 ilvG 30795..32441 (-) 1647 WP_075707130.1 acetolactate synthase 2 catalytic subunit -
  GZK95_RS00145 comM 32976..34499 (+) 1524 WP_075714847.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GZK95_RS00150 - 34553..35536 (-) 984 WP_075707126.1 DUF2860 domain-containing protein -
  GZK95_RS00155 - 35710..36645 (+) 936 WP_075714845.1 acyltransferase -
  GZK95_RS00160 - 36693..37295 (-) 603 WP_075707122.1 thiol:disulfide interchange protein DsbA/DsbL -
  GZK95_RS00165 - 37323..38309 (-) 987 WP_075707120.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54717.67 Da        Isoelectric Point: 8.0035

>NTDB_id=73069 GZK95_RS00145 WP_075714847.1 32976..34499(+) (comM) [Vibrio panuliri strain JCM 19500]
MGLAVVYSRASVGVEAPLVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQVPLNALQDQEFIGELALSGELRAVKGVLPAALTVQNQGRRLVVPRVNGDQAALVGREVHKSAESL
VAVCADLCGQQTLQLHQSDVEKSPVNSGRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLSDLLPEMSD
AEAMESASVASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDALREPLE
SGEIIISRAQGKVRFPARFQLIGALNPSPSGHYDASHSQGNPQAALRYVSRLSGPLLDRFDMSIEIPSLPKGTLAAGGDR
GESTPIVKQRVLHAREIMLARSGKANALLESREIERDCHLQSADAQFLEQALHRLGLSIRAYHRIIKVARTIADLAGEAQ
ITRSHLAEALGYRAMDRLLKHLHAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=73069 GZK95_RS00145 WP_075714847.1 32976..34499(+) (comM) [Vibrio panuliri strain JCM 19500]
ATGGGGTTAGCGGTGGTGTATAGCCGAGCATCTGTAGGTGTTGAAGCGCCATTGGTGACGGTGGAAGTGCATATTAGCAA
CGGCATGCCGGGGTTTGCGTTAGTGGGGTTACCGGAGACCACGGTGAAAGAGTCTCGTGATCGAGTGAGGAGCGCAATTA
TTAACTCTCGATTTGAGTTTCCTGCTAAACGCATTACCGTGAACCTTGCGCCGGCAGACTTACCCAAGGAGGGAGGGCGA
TTTGATTTGCCGATCGCGCTGGGCATTTTGGCAGCTTCACAGCAAGTGCCACTTAACGCGCTACAAGATCAGGAGTTTAT
CGGCGAGCTCGCTTTGTCGGGAGAGTTACGGGCAGTAAAAGGGGTACTACCTGCGGCGTTGACAGTGCAAAACCAAGGTC
GTCGTTTAGTGGTCCCGAGAGTGAATGGTGATCAAGCAGCATTAGTTGGGAGAGAAGTGCATAAATCTGCGGAGAGCTTA
GTCGCGGTTTGTGCGGACTTGTGTGGTCAACAAACACTGCAATTGCACCAAAGTGATGTGGAGAAATCCCCGGTAAACTC
CGGTCGTGATTTGCAGGATATTATTGGTCAGCAGCAAGGTAAGCGTGCGCTTGAAATTGCTGCTGCCGGGCATCATAACT
TGTTGTTTCTTGGGCCACCAGGTACAGGAAAAACCATGCTCGCCTCGCGTTTAAGTGACTTGTTGCCAGAGATGTCCGAT
GCAGAAGCGATGGAGTCGGCGTCTGTTGCTTCGCTAACACAGCAGGAGATCAATCAGCACAATTGGAAGTTACGTCCTTT
TCGCGCTCCCCATCACTCAAGCTCTATGGCTGCTTTGGTGGGCGGCGGGTCTATCCCGAGACCTGGTGAGATATCGTTAG
CACACAATGGCTTATTGTTTCTTGATGAAATGCCGGAATTTGAGCGTAAGGTATTGGATGCGCTCCGTGAACCCTTGGAG
TCAGGGGAAATCATTATTTCGCGAGCACAGGGGAAAGTCCGTTTTCCAGCGCGTTTTCAATTGATTGGTGCTCTTAACCC
AAGCCCTTCGGGTCATTATGATGCGAGCCACTCGCAAGGAAACCCTCAAGCGGCACTGCGTTACGTGAGTCGTTTGTCAG
GGCCTTTATTAGATCGTTTCGACATGTCGATCGAGATTCCATCGCTGCCAAAAGGGACGTTGGCAGCGGGAGGAGATCGG
GGGGAAAGCACGCCAATCGTTAAGCAGCGTGTGCTACATGCGCGGGAGATTATGTTAGCTCGTAGTGGTAAGGCGAATGC
TTTACTGGAGAGTCGTGAAATAGAGCGCGACTGCCATTTACAAAGCGCTGATGCGCAGTTTTTAGAGCAGGCATTGCATC
GACTCGGCCTCTCGATTCGTGCCTATCATCGCATCATAAAGGTCGCACGCACTATCGCTGATCTTGCGGGAGAGGCGCAG
ATTACTCGCAGTCATCTTGCTGAGGCTTTAGGTTACCGCGCGATGGATCGCTTGTTGAAGCATTTACATGCGCAAGCGGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.037

100

0.83
  comM Vibrio campbellii strain DS40M4

79.684

100

0.797
  comM Haemophilus influenzae Rd KW20

66.403

99.803

0.663
  comM Glaesserella parasuis strain SC1401

64.188

100

0.647
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

99.803

0.436

Multiple sequence alignment