Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J80_RS05260 Genome accession   NZ_AP024553
Coordinates   1126378..1126992 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain IDH-03329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1121378..1131992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J80_RS05235 - 1121562..1122776 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  K6J80_RS05240 lpxH 1122872..1123612 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  K6J80_RS05245 - 1123653..1124147 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  K6J80_RS05250 cysS 1124293..1125672 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  K6J80_RS05255 ruvC 1125760..1126281 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  K6J80_RS05260 ruvA 1126378..1126992 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J80_RS05265 ruvB 1127048..1128052 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J80_RS05270 cydA 1128511..1130097 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  K6J80_RS05275 cydB 1130115..1131251 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  K6J80_RS05280 cydX 1131264..1131371 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  K6J80_RS05285 ybgE 1131364..1131681 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=73069 K6J80_RS05260 WP_000580359.1 1126378..1126992(+) (ruvA) [Vibrio cholerae strain IDH-03329]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=73069 K6J80_RS05260 WP_000580359.1 1126378..1126992(+) (ruvA) [Vibrio cholerae strain IDH-03329]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment