Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   N5O82_RS19195 Genome accession   NZ_CP104580
Coordinates   4045591..4046928 (+) Length   445 a.a.
NCBI ID   WP_026006503.1    Uniprot ID   A0A137YGV3
Organism   Stutzerimonas stutzeri strain GD04120     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4040591..4051928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O82_RS19170 (N5O82_19165) pgeF 4040621..4041358 (-) 738 WP_017244513.1 peptidoglycan editing factor PgeF -
  N5O82_RS19175 (N5O82_19170) rluD 4041355..4042329 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  N5O82_RS19180 (N5O82_19175) - 4042534..4043523 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  N5O82_RS19185 (N5O82_19180) - 4043645..4043878 (+) 234 WP_013984074.1 PP0621 family protein -
  N5O82_RS19190 (N5O82_19185) pilS 4043868..4045460 (+) 1593 WP_013984075.1 ATP-binding protein Regulator
  N5O82_RS19195 (N5O82_19190) pilR 4045591..4046928 (+) 1338 WP_026006503.1 sigma-54 dependent transcriptional regulator Regulator
  N5O82_RS19200 (N5O82_19195) - 4046972..4048030 (-) 1059 WP_011914666.1 DUF2333 family protein -
  N5O82_RS19205 (N5O82_19200) - 4048248..4049843 (+) 1596 WP_014597755.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49558.09 Da        Isoelectric Point: 6.4140

>NTDB_id=730669 N5O82_RS19195 WP_026006503.1 4045591..4046928(+) (pilR) [Stutzerimonas stutzeri strain GD04120]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQHIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADVM
LRRLAQECGEATARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGLPENGEASLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=730669 N5O82_RS19195 WP_026006503.1 4045591..4046928(+) (pilR) [Stutzerimonas stutzeri strain GD04120]
ATGACCGCGCGCCAGAAAGCCCTGATCATCGACGACGAGCCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCAT
GAAGCTCGATACCCGCAGCGCACGCAACCTCAAGGAGGCGCGCGAGCTGCTGGCACGCGAGCACTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCAGTGGCCTTGAGCTGGTCCAGCACATCCAGCAACAGTACCCGCAACTGCCCGTGGCG
ATGATCACCGCCTATGGCAGCCTGGATACCGCCATCGGTGCACTCAAGGCCGGTGCGTTCGACTTCCTCACCAAACCGGT
GGACCTGAACCGCCTGCGCGAGCTGGTCAGTACCGCCCTGCGCCTGCGCGCGCCCGCAGCCGAAGCGCCGGTGGACAGTC
GCCTGCTGGGCAGCTCGCCGCCGATGAAAACCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAACTGGTGGCACGCCTGATTCACGAGCAGGGCCCGCGCAGCGAAAAGCCATT
CGTGCCGGTCAACTGCGGTGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCAGCG
GCGCCATCGAGGACAAGCCCGGCCTGTTCCAGGCCGCCAACGGTGGCACGCTGTTTCTCGACGAGGTGGCGGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGCGGTGCGCAGGAAGTGATGGT
CGATGTACGCATCCTCTGCGCCACCCACAAGGATCTCGCCAGCGAGGTCGCCGCAGGCCGTTTTCGCCAGGATCTCTACT
ACCGCCTGAACGTCATCGAACTGCGTGTACCGCCACTACGCGAACGCCGGGAAGACATCGGCCTGCTCGCCGATGTCATG
CTGCGCCGCCTGGCGCAGGAATGCGGCGAGGCCACGGCCCGCCTGCATCCCGATGCCCTGGCCAAGCTGGAGAACTATCG
CTTTCCGGGCAACGTCCGCGAGCTGGAGAATATGCTCGAACGCGCCTACACCCTGTGCGAAGGCGACGAGATCAAGGCTG
GCGACCTGCGCCTGGCGGATAGCCCAGGCCTGCCGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTGGAGGAC
CACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAAACACGCTGGAACCGCACCGCGGCTGCCCAGCG
ACTGGGGCTGACCTTCCGCTCGATGCGCTACCGTCTGAAGAAACTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A137YGV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854
  pilR Acinetobacter baumannii strain A118

50.545

100

0.521
  luxO Vibrio cholerae strain A1552

38.117

100

0.382