Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5O83_RS14990 Genome accession   NZ_CP104579
Coordinates   3063674..3064306 (-) Length   210 a.a.
NCBI ID   WP_039964821.1    Uniprot ID   W6RDS6
Organism   Pseudomonas oleovorans strain GD04132     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3058674..3069306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O83_RS14960 (N5O83_14950) murB 3059793..3060812 (-) 1020 WP_279533602.1 UDP-N-acetylmuramate dehydrogenase -
  N5O83_RS14965 (N5O83_14955) - 3060809..3061273 (-) 465 WP_147812233.1 low molecular weight protein-tyrosine-phosphatase -
  N5O83_RS14970 (N5O83_14960) kdsB 3061273..3062037 (-) 765 WP_279533603.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5O83_RS14975 (N5O83_14965) - 3062038..3062223 (-) 186 WP_003245207.1 Trm112 family protein -
  N5O83_RS14980 (N5O83_14970) lpxK 3062246..3063247 (-) 1002 WP_279533604.1 tetraacyldisaccharide 4'-kinase -
  N5O83_RS14985 (N5O83_14975) - 3063249..3063677 (-) 429 WP_003461976.1 biopolymer transporter ExbD -
  N5O83_RS14990 (N5O83_14980) exbB 3063674..3064306 (-) 633 WP_039964821.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5O83_RS14995 (N5O83_14985) comA 3064363..3066576 (-) 2214 WP_279534950.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5O83_RS15000 (N5O83_14990) - 3066715..3067242 (+) 528 WP_279533605.1 DUF2062 domain-containing protein -
  N5O83_RS15005 (N5O83_14995) - 3067280..3068524 (-) 1245 WP_279533606.1 lipoprotein-releasing ABC transporter permease subunit -
  N5O83_RS15010 (N5O83_15000) lolD 3068524..3069210 (-) 687 WP_279534951.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22895.17 Da        Isoelectric Point: 8.5156

>NTDB_id=730633 N5O83_RS14990 WP_039964821.1 3063674..3064306(-) (exbB) [Pseudomonas oleovorans strain GD04132]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPARVTPANLLAQVWRWIKDKKLNNQKLKELREHSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASMLASGIAKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEMVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=730633 N5O83_RS14990 WP_039964821.1 3063674..3064306(-) (exbB) [Pseudomonas oleovorans strain GD04132]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTCTGTTCCATCGCTGCTGCCGGTATCGTTGC
CGAGCGCCTGTGGACCCTGCGGCCCGCCCGCGTCACCCCGGCCAATTTGCTGGCCCAGGTATGGCGCTGGATCAAGGACA
AGAAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGAGCATTCGCCGCTGGGGCAGATACTCGCTGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAGGCTGCCGCGCGCGTCATCCACGAGCTGGAGCGTTATCT
CAATGCGCTCGGCACCATTGCCGGCATCGCGCCGCTGCTGGGCCTGCTTGGCACCGTGCTGGGCATGATCGAAATCTTCA
GCTCCTTCATGGGCTCGGGCATGGCTAACGCTTCCATGCTCGCCAGCGGTATCGCCAAGGCGCTGATCACCACGGCAGCC
GGCCTGATGGTGGCGATCCCAGCGCTGTTTTTCCACCGCTACCTGCAGCGCCGCGTCGACGAGTTGGTGGTGGGCATGGA
GCAGGAAGCGATCAAGTTGGTGGAGATGGTGCAGGGTGATCGCGATGTCGACCTGGGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6RDS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.619

100

0.876