Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | GZI12_RS11815 | Genome accession | NZ_AP019651 |
| Coordinates | 2522563..2523174 (+) | Length | 203 a.a. |
| NCBI ID | WP_162047166.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III291 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2517563..2528174
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZI12_RS11795 | - | 2517775..2518701 (-) | 927 | WP_162047163.1 | ABC transporter ATP-binding protein | - |
| GZI12_RS11800 | - | 2518943..2520627 (-) | 1685 | Protein_2272 | SulP family inorganic anion transporter | - |
| GZI12_RS11805 | can | 2520871..2521539 (+) | 669 | WP_162047164.1 | carbonate dehydratase | - |
| GZI12_RS11810 | hpt | 2521640..2522170 (-) | 531 | WP_162047165.1 | hypoxanthine phosphoribosyltransferase | - |
| GZI12_RS11815 | opaR | 2522563..2523174 (+) | 612 | WP_162047166.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| GZI12_RS11820 | lpdA | 2523264..2524694 (-) | 1431 | WP_162047167.1 | dihydrolipoyl dehydrogenase | - |
| GZI12_RS11825 | aceF | 2524965..2526854 (-) | 1890 | WP_162047168.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 23458.68 Da Isoelectric Point: 5.3211
>NTDB_id=73053 GZI12_RS11815 WP_162047166.1 2522563..2523174(+) (opaR) [Vibrio taketomensis strain C4III291]
MDSIAKRPRTRLSPTKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFLS
DNIDLDLHAKDNLGNITNSMMTLVAEDCHWLKVWFEWSASTREEVWPLFVTTNRTNQLLVKNMFVKGQERGEVCDEYDPE
DLANLFHGICYSLFVQANRTTEHNDLVKLADTYLNMLCIYKKD
MDSIAKRPRTRLSPTKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFLS
DNIDLDLHAKDNLGNITNSMMTLVAEDCHWLKVWFEWSASTREEVWPLFVTTNRTNQLLVKNMFVKGQERGEVCDEYDPE
DLANLFHGICYSLFVQANRTTEHNDLVKLADTYLNMLCIYKKD
Nucleotide
Download Length: 612 bp
>NTDB_id=73053 GZI12_RS11815 WP_162047166.1 2522563..2523174(+) (opaR) [Vibrio taketomensis strain C4III291]
ATGGATTCAATTGCGAAAAGACCAAGAACCCGTCTTTCACCCACAAAGCGCAAGCAACAATTAATGGATATCTCTCTTGA
GGTATTTGCTCGTCGAGGTATTGGTCGTGGCGGACATGCCGATATTGCTGAAATCGCACAGGTTTCAGTAGCAACGGTAT
TTAACTATTTCCCAACTCGTGAAGATTTGGTCGATGATGTACTGACCTACGTTGTCCGCCAGTTCTCCAACTTCTTATCA
GACAATATCGATCTTGATTTGCACGCTAAAGACAACCTCGGCAACATCACTAACTCGATGATGACGTTAGTGGCTGAAGA
TTGTCACTGGCTAAAAGTCTGGTTTGAATGGAGCGCATCGACTCGTGAAGAAGTGTGGCCATTGTTTGTAACCACTAACC
GCACCAACCAGCTACTGGTCAAAAACATGTTCGTGAAAGGCCAAGAACGTGGTGAAGTGTGTGATGAATATGATCCAGAA
GATCTCGCCAACTTATTCCACGGTATTTGCTACTCGCTGTTTGTACAAGCAAACCGTACTACCGAGCATAATGATTTAGT
TAAGTTGGCCGACACCTACTTAAACATGCTATGCATCTACAAGAAAGATTGA
ATGGATTCAATTGCGAAAAGACCAAGAACCCGTCTTTCACCCACAAAGCGCAAGCAACAATTAATGGATATCTCTCTTGA
GGTATTTGCTCGTCGAGGTATTGGTCGTGGCGGACATGCCGATATTGCTGAAATCGCACAGGTTTCAGTAGCAACGGTAT
TTAACTATTTCCCAACTCGTGAAGATTTGGTCGATGATGTACTGACCTACGTTGTCCGCCAGTTCTCCAACTTCTTATCA
GACAATATCGATCTTGATTTGCACGCTAAAGACAACCTCGGCAACATCACTAACTCGATGATGACGTTAGTGGCTGAAGA
TTGTCACTGGCTAAAAGTCTGGTTTGAATGGAGCGCATCGACTCGTGAAGAAGTGTGGCCATTGTTTGTAACCACTAACC
GCACCAACCAGCTACTGGTCAAAAACATGTTCGTGAAAGGCCAAGAACGTGGTGAAGTGTGTGATGAATATGATCCAGAA
GATCTCGCCAACTTATTCCACGGTATTTGCTACTCGCTGTTTGTACAAGCAAACCGTACTACCGAGCATAATGATTTAGT
TAAGTTGGCCGACACCTACTTAAACATGCTATGCATCTACAAGAAAGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
79.803 |
100 |
0.798 |
| hapR | Vibrio cholerae C6706 |
73.367 |
98.03 |
0.719 |
| hapR | Vibrio cholerae strain A1552 |
73.367 |
98.03 |
0.719 |