Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   N5C46_RS06625 Genome accession   NZ_CP104558
Coordinates   1285049..1286017 (-) Length   322 a.a.
NCBI ID   WP_261751403.1    Uniprot ID   -
Organism   Rossellomorea vietnamensis strain RL-WG62     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280049..1291017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C46_RS06595 (N5C46_06595) - 1280414..1281163 (-) 750 WP_261751399.1 YjbA family protein -
  N5C46_RS06605 (N5C46_06605) - 1281608..1282369 (-) 762 WP_261751401.1 DUF2268 domain-containing protein -
  N5C46_RS06610 (N5C46_06610) fabF 1282465..1283709 (-) 1245 WP_261751402.1 beta-ketoacyl-ACP synthase II -
  N5C46_RS06615 (N5C46_06615) - 1283761..1284693 (-) 933 WP_159361745.1 beta-ketoacyl-ACP synthase III -
  N5C46_RS06620 (N5C46_06620) comZ 1284864..1285052 (-) 189 WP_034763435.1 ComZ family protein Regulator
  N5C46_RS06625 (N5C46_06625) med 1285049..1286017 (-) 969 WP_261751403.1 BMP family ABC transporter substrate-binding protein Regulator
  N5C46_RS06630 (N5C46_06630) - 1286119..1286838 (-) 720 WP_261751404.1 hypothetical protein -
  N5C46_RS06635 (N5C46_06635) - 1286861..1287604 (-) 744 WP_261751405.1 hydrolase -
  N5C46_RS06640 (N5C46_06640) - 1287898..1288035 (+) 138 WP_336275582.1 DUF2929 family protein -
  N5C46_RS06645 (N5C46_06645) clpB 1288068..1290659 (-) 2592 WP_261751406.1 ATP-dependent chaperone ClpB -
  N5C46_RS06650 (N5C46_06650) - 1290782..1290961 (-) 180 WP_034763424.1 YjzC family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35837.06 Da        Isoelectric Point: 4.4878

>NTDB_id=730505 N5C46_RS06625 WP_261751403.1 1285049..1286017(-) (med) [Rossellomorea vietnamensis strain RL-WG62]
MNKKWYMFFLIVFLVGLSGCSAGNSEEIEKVGLLVPEAVNDGVWGTKGYKGLLKIQSDYHADVFYKEGMKNDTSIKQAVE
EFDDKDVTLVFGHGSEYADVFNDLSGEHPDMHFVSFNGHATEKNTTSLQFKGYAMGFFGGMTAAFHSKTKKIGVIAAFEW
QPEVQGFIDGAKYQNSETEVNVEYTNHWDDQERALNELDTLLKEGIDVVYPAGDGYNVAVIEKLKEKGLYAIGYVSDQSD
LGESTVLTSTVQQADKLYGVVAERFAHDELESGNLEFDFGDGVISMGKFSPLIPKDFQTEIKQHIKDYIDTGKLPNGKES
KQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=730505 N5C46_RS06625 WP_261751403.1 1285049..1286017(-) (med) [Rossellomorea vietnamensis strain RL-WG62]
ATGAATAAGAAATGGTACATGTTTTTCCTGATTGTATTCCTGGTCGGACTAAGTGGTTGTTCAGCAGGAAACAGCGAAGA
GATAGAAAAGGTTGGTTTACTTGTTCCGGAAGCAGTGAATGATGGAGTTTGGGGAACAAAAGGGTACAAAGGATTACTAA
AAATACAATCCGATTATCATGCAGACGTGTTCTATAAAGAGGGAATGAAGAATGATACATCAATCAAGCAGGCAGTAGAG
GAATTTGATGATAAGGATGTCACCTTAGTATTTGGACATGGGAGTGAGTATGCGGATGTCTTTAACGACTTGTCTGGAGA
GCATCCCGATATGCATTTCGTCAGCTTTAACGGACATGCCACGGAGAAAAACACGACAAGCCTACAGTTCAAGGGATACG
CTATGGGCTTTTTCGGAGGAATGACAGCAGCCTTTCACTCTAAAACGAAGAAGATCGGTGTGATTGCGGCCTTTGAGTGG
CAGCCTGAGGTTCAAGGGTTTATAGATGGAGCGAAGTATCAAAACAGTGAGACAGAGGTTAACGTAGAGTACACCAATCA
TTGGGACGATCAAGAGAGGGCCCTTAACGAGTTGGACACTTTACTAAAAGAGGGTATCGATGTTGTGTATCCTGCAGGTG
ACGGCTATAATGTAGCAGTAATCGAAAAGCTTAAGGAGAAAGGACTTTATGCCATAGGGTACGTTTCCGATCAATCCGAT
CTCGGGGAATCAACGGTCCTGACAAGCACCGTCCAGCAGGCTGATAAGTTGTATGGAGTAGTAGCCGAGAGGTTCGCCCA
TGATGAGCTGGAGTCAGGCAACCTGGAATTTGATTTTGGAGACGGTGTGATCTCCATGGGAAAATTCAGTCCGCTCATTC
CGAAAGATTTTCAAACTGAAATAAAGCAACATATCAAGGACTATATTGATACCGGCAAATTGCCGAATGGAAAGGAATCG
AAGCAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

56.329

98.137

0.553