Detailed information NTG0730483

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N5C08_RS20930
• Genome accession: NZ_CP104557
• Coordinates: 4483612..4484478 (+)
• Length: 288 a.a.
• NCBI ID: WP_060480580.1
• Uniprot ID: -
• Organism: Pseudomonas promysalinigenes strain RL-WG26
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4478612..4489478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5C08_RS20900 (N5C08_20900)	-	4478919..4480091 (-)	1173	WP_261744172.1	multidrug effflux MFS transporter	-
N5C08_RS20905 (N5C08_20905)	-	4480234..4481103 (+)	870	WP_060480577.1	LysR family transcriptional regulator	-
N5C08_RS20910 (N5C08_20910)	-	4481274..4481465 (-)	192	WP_155500317.1	hypothetical protein	-
N5C08_RS20920 (N5C08_20920)	-	4481776..4482186 (-)	411	WP_261744173.1	pilin	-
N5C08_RS20925 (N5C08_20925)	-	4482401..4483609 (+)	1209	WP_261744174.1	type II secretion system F family protein	-
N5C08_RS20930 (N5C08_20930)	pilD	4483612..4484478 (+)	867	WP_060480580.1	prepilin peptidase	Machinery gene
N5C08_RS20935 (N5C08_20935)	coaE	4484478..4485101 (+)	624	WP_186478216.1	dephospho-CoA kinase	-
N5C08_RS20940 (N5C08_20940)	yacG	4485098..4485298 (+)	201	WP_186478215.1	DNA gyrase inhibitor YacG	-
N5C08_RS20945 (N5C08_20945)	-	4485393..4486046 (-)	654	WP_189658075.1	energy-coupling factor ABC transporter permease	-
N5C08_RS20950 (N5C08_20950)	-	4486184..4486813 (+)	630	WP_261744176.1	DUF1780 domain-containing protein	-
N5C08_RS20955 (N5C08_20955)	-	4486946..4487119 (+)	174	WP_054886115.1	DUF3094 domain-containing protein	-
N5C08_RS20960 (N5C08_20960)	-	4487204..4488499 (+)	1296	WP_261744177.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31770.91 Da
• Isoelectric Point: 7.5999

>NTDB_id=730483 N5C08_RS20930 WP_060480580.1 4483612..4484478(+) (pilD) [Pseudomonas promysalinigenes strain RL-WG26]
MAAWTALAEQPSYFICLAAVLGLLMGSFLNVLVHRLPIMLERQWQREAQQVLGLPTRQHERFDLLLPASHCPPCKHAIRA
WENIPVISYLALRGRCSACKQPISARYPLVEVACALLSMAVAWHSGVSLQALALLMLTWSLLALSLIDQDQQLLPDVLVL
PTLWLGLMVNAFDMLVALPDALWGAVAGYLSLWSVYWVFKLVTGKEGMGYGDFKLLALIGAWGGWQVLPMTMLLSSLIGV
VAGLCLLRLRKQSASTAIAFGPYLATAGWIAVLWGDEIYAFYLQLFGM

Nucleotide

• Length: 867 bp

>NTDB_id=730483 N5C08_RS20930 WP_060480580.1 4483612..4484478(+) (pilD) [Pseudomonas promysalinigenes strain RL-WG26]
ATGGCCGCCTGGACTGCACTGGCTGAACAGCCGTCATATTTCATTTGCCTGGCAGCGGTACTCGGGCTGCTGATGGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAGCGCCAGTGGCAGCGTGAGGCGCAGCAGGTGCTGGGCT
TGCCTACCCGGCAGCACGAGCGCTTCGACCTGCTTCTACCCGCTTCCCACTGCCCACCATGCAAGCATGCGATTCGCGCA
TGGGAGAACATTCCGGTAATCAGTTACCTGGCATTGCGCGGACGCTGCTCGGCTTGCAAGCAGCCGATCAGTGCCCGCTA
TCCACTGGTCGAAGTGGCCTGTGCATTATTGTCCATGGCGGTGGCATGGCATTCTGGTGTCAGCCTGCAGGCCCTTGCCC
TGCTGATGCTGACCTGGAGCCTGTTGGCACTGAGCCTGATCGACCAGGACCAACAGCTTTTGCCTGATGTGCTGGTGCTG
CCGACGCTATGGCTGGGTTTGATGGTCAACGCCTTCGATATGCTGGTCGCATTGCCCGATGCCCTCTGGGGCGCGGTGGC
CGGTTACCTAAGCCTGTGGTCGGTGTACTGGGTATTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTATTGGCGCTCATCGGCGCGTGGGGCGGCTGGCAGGTATTACCGATGACCATGCTGTTATCATCGCTGATCGGTGTG
GTCGCGGGCTTGTGCCTGCTGCGCCTACGCAAGCAATCGGCCAGTACTGCCATCGCCTTCGGCCCTTATCTGGCAACTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATATACGCCTTCTACCTGCAACTGTTTGGAATGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Vibrio campbellii strain DS40M4	50.36	96.528	0.486
pilD	Acinetobacter baumannii D1279779	51.119	93.056	0.476
pilD	Acinetobacter nosocomialis M2	50.373	93.056	0.469
pilD	Neisseria gonorrhoeae MS11	47.955	93.403	0.448