Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   N5E84_RS18380 Genome accession   NZ_CP104555
Coordinates   604248..605351 (+) Length   367 a.a.
NCBI ID   WP_069212120.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 599248..610351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS18350 (N5E84_18350) - 600471..600722 (-) 252 WP_010319896.1 YgjV family protein -
  N5E84_RS18355 (N5E84_18355) - 601030..601347 (-) 318 WP_010319897.1 DUF496 family protein -
  N5E84_RS18360 (N5E84_18360) - 601538..601741 (+) 204 WP_026027876.1 hypothetical protein -
  N5E84_RS18365 (N5E84_18365) - 601799..602452 (+) 654 WP_019282227.1 YceH family protein -
  N5E84_RS18370 (N5E84_18370) - 602453..602776 (+) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  N5E84_RS18375 (N5E84_18375) - 602872..604023 (+) 1152 WP_019282226.1 conjugal transfer protein TraF -
  N5E84_RS18380 (N5E84_18380) luxP 604248..605351 (+) 1104 WP_069212120.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  N5E84_RS18385 (N5E84_18385) luxQ 605367..607913 (+) 2547 WP_069212121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  N5E84_RS18390 (N5E84_18390) - 607931..608596 (-) 666 WP_019282225.1 flagellar brake protein -
  N5E84_RS18395 (N5E84_18395) glpD 608740..610284 (-) 1545 WP_019282224.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 41759.36 Da        Isoelectric Point: 6.0624

>NTDB_id=730464 N5E84_RS18380 WP_069212120.1 604248..605351(+) (luxP) [Vibrio sp. J502]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQKNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVA
MAEAIKWDLEGKPVPTVYSGDFELVTKEVSSADIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=730464 N5E84_RS18380 WP_069212120.1 604248..605351(+) (luxP) [Vibrio sp. J502]
ATGAGAAAAATCCTGCTCCTTTCATTTGTATTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGCTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCAGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCACGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTG
GTGAGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCT
ATGGCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAA
AGAGGTCTCTTCAGCGGATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.712

98.365

0.627