Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   N5E84_RS10300 Genome accession   NZ_CP104554
Coordinates   2249905..2250522 (+) Length   205 a.a.
NCBI ID   WP_017043694.1    Uniprot ID   A0A233HMW8
Organism   Vibrio sp. J502     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244905..2255522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS10280 (N5E84_10280) - 2245276..2246196 (-) 921 WP_029388351.1 ABC transporter ATP-binding protein -
  N5E84_RS10285 (N5E84_10285) - 2246330..2247997 (-) 1668 WP_043004678.1 SulP family inorganic anion transporter -
  N5E84_RS10290 (N5E84_10290) can 2248247..2248915 (+) 669 WP_010319545.1 carbonate dehydratase -
  N5E84_RS10295 (N5E84_10295) hpt 2249003..2249533 (-) 531 WP_010319544.1 hypoxanthine phosphoribosyltransferase -
  N5E84_RS10300 (N5E84_10300) opaR 2249905..2250522 (+) 618 WP_017043694.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  N5E84_RS10305 (N5E84_10305) lpdA 2250640..2252067 (-) 1428 WP_013857673.1 dihydrolipoyl dehydrogenase -
  N5E84_RS10310 (N5E84_10310) aceF 2252368..2254251 (-) 1884 WP_019282813.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23672.24 Da        Isoelectric Point: 6.1461

>NTDB_id=730437 N5E84_RS10300 WP_017043694.1 2249905..2250522(+) (opaR) [Vibrio sp. J502]
METSIEKRPRTRLSPQKRKLQLMEIALEVFATRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTHVVRQFSNFL
ADNIDLDLHAKDNLTNITTKMISLVIEDCHWLKVWFEWSASTREEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHEP
EHLATLFLGIFYSLFVQANRIQDEASMGVLVKSYLSMLCIYKKDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=730437 N5E84_RS10300 WP_017043694.1 2249905..2250522(+) (opaR) [Vibrio sp. J502]
ATGGAAACATCGATAGAAAAACGCCCCAGAACTCGCTTATCACCACAAAAACGCAAACTTCAACTGATGGAAATCGCCCT
TGAAGTGTTTGCAACACGGGGAATAGGCCGAGGTGGCCACGCAGATATTGCTGAAATCGCCCAAGTTTCAGTCGCTACTG
TCTTTAACTACTTTCCAACCCGAGAAGATTTAGTCGACGACGTACTCACTCATGTTGTACGTCAGTTTTCAAACTTCCTC
GCAGATAATATTGATCTTGATTTGCATGCGAAAGATAACTTAACCAACATCACCACTAAGATGATTTCTCTTGTGATTGA
AGATTGTCACTGGTTAAAAGTATGGTTTGAATGGAGCGCTTCAACGCGCGAAGAAGTGTGGCCACTTTTTGTCTCCACCA
ACCGTACTAATCAACTTTTGGTACAAAATATGTTTATCAAAGCCATTGAACGTGGCGAAGTGTGCGATCAACATGAGCCA
GAACATCTTGCTACGCTCTTTCTTGGTATCTTCTACTCACTGTTTGTACAAGCAAATCGCATACAAGACGAAGCCAGCAT
GGGCGTACTCGTGAAAAGCTACCTCAGTATGCTCTGCATCTATAAAAAAGATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HMW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.178

98.537

0.81
  hapR Vibrio cholerae C6706

74.257

98.537

0.732
  hapR Vibrio cholerae strain A1552

74.257

98.537

0.732