Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   N5E84_RS07870 Genome accession   NZ_CP104554
Coordinates   1695952..1697358 (-) Length   468 a.a.
NCBI ID   WP_026028983.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1690952..1702358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS07835 (N5E84_07835) moaE 1691622..1692095 (-) 474 WP_019282889.1 molybdopterin synthase catalytic subunit MoaE -
  N5E84_RS07840 (N5E84_07840) moaD 1692095..1692340 (-) 246 WP_010320680.1 molybdopterin synthase sulfur carrier subunit -
  N5E84_RS07845 (N5E84_07845) moaC 1692333..1692833 (-) 501 WP_010320681.1 cyclic pyranopterin monophosphate synthase MoaC -
  N5E84_RS07850 (N5E84_07850) moaB 1692844..1693356 (-) 513 WP_010320682.1 molybdenum cofactor biosynthesis protein B -
  N5E84_RS07855 (N5E84_07855) moaA 1693424..1694413 (-) 990 WP_026028246.1 GTP 3',8-cyclase MoaA -
  N5E84_RS07860 (N5E84_07860) - 1694724..1695614 (+) 891 WP_013857260.1 YvcK family protein -
  N5E84_RS07865 (N5E84_07865) luxU 1695611..1695949 (-) 339 WP_013857261.1 quorum-sensing phosphorelay protein LuxU -
  N5E84_RS07870 (N5E84_07870) luxO 1695952..1697358 (-) 1407 WP_026028983.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  N5E84_RS07875 (N5E84_07875) uvrB 1697600..1699630 (-) 2031 WP_029189720.1 excinuclease ABC subunit UvrB -
  N5E84_RS07885 (N5E84_07885) - 1700333..1701265 (-) 933 WP_019282888.1 LysR family transcriptional regulator -
  N5E84_RS07890 (N5E84_07890) - 1701385..1702053 (+) 669 WP_019282887.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52158.56 Da        Isoelectric Point: 6.0312

>NTDB_id=730433 N5E84_RS07870 WP_026028983.1 1695952..1697358(-) (luxO) [Vibrio sp. J502]
MQPDFSLQKAKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLAHREPDLILLDLRLPDMTGMDVLHAVKSHY
PNVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEAGNPGNQNYQGFIGSSQTMQSVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLAPEVVERFTRYEWPGNVRQLQNVLRNVVVLNHGNEIELSMLPPPLNQVVDNKI
RLANLTTETRKENITVHDIFPLWMTEKQAIEQAIEACDGNIPKAASYLDVSPSTIYRKLQAWNSRENS

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=730433 N5E84_RS07870 WP_026028983.1 1695952..1697358(-) (luxO) [Vibrio sp. J502]
ATGCAACCTGACTTTTCTCTACAAAAGGCTAAATATCTTTTGATGGTGGAAGATACGGCTTCCGTTGCGGCGCTGTATCG
TTCATACCTCACCCCCCTTGAAATCGATATCAATATTGTTGGTACAGGTCGTGATGCGATAGAGAGTTTAGCTCACCGAG
AGCCGGACCTCATATTGCTGGATCTTCGATTACCCGATATGACGGGCATGGACGTTTTACATGCTGTGAAAAGTCACTAC
CCCAATGTGCCAGTGATATTCATGACCGCTCATGGTTCGATCGATACCGCAGTGGAAGCGATGCGTCACGGTGCCCAAGA
TTTCTTGATCAAACCTTGTGAAGCAGACCGCTTGCGCGTCACGGTTAACAACGCCATACGTAAAGCTAGCAAACTAAAAA
ATGAGGCTGGTAACCCGGGTAATCAGAACTACCAAGGTTTTATCGGCAGCAGTCAAACCATGCAATCAGTCTATCGAACC
ATTGACTCAGCGGCCTCCAGTAAAGCCAGTATTTTTATTACTGGCGAAAGTGGTACGGGTAAAGAGGTGTGCGCAGAAGC
GATTCATGCGGCCAGTAAACGTGGCGATAAACCCTTCATTGCGATTAACTGCGCCGCCATTCCTAAAGACTTAATAGAGA
GTGAACTCTTTGGCCACGTGAAAGGCGCATTTACTGGCGCAGCGACCGATCGCCAAGGCGCAGCCGAGTTGGCTGATGGT
GGCACACTGTTTTTGGATGAACTGTGTGAAATGGATTTGGATTTGCAGACCAAGCTGTTGCGCTTTATCCAAACGGGCAC
ATTCCAGAAAGTGGGCTCATCGAAGATGAAAAGTGTCGATGTTCGTTTTGTCTGCGCTACCAACCGCGATCCTTGGAAAG
AAGTGCAAGAGGGGCGTTTTCGTGAAGATTTGTACTATCGTCTTTATGTGATCCCATTGCATTTACCACCGCTACGCGAG
CGAGGCGATGACGTTATTGAAATTGCTTACTCTTTGCTCGGCTTTATGTCTAAAGAAGAAGGCAAAGGTTTTGTCCGCTT
AGCGCCAGAGGTTGTGGAGCGTTTTACGCGCTATGAATGGCCGGGTAATGTGCGTCAACTGCAAAACGTGTTGCGGAATG
TGGTGGTATTGAACCACGGTAACGAGATCGAACTGAGCATGCTACCCCCACCGCTAAATCAAGTCGTGGATAACAAAATT
CGATTAGCAAACTTAACGACGGAAACACGCAAGGAAAATATAACCGTGCACGATATTTTTCCTTTGTGGATGACGGAAAA
ACAAGCTATCGAACAAGCGATAGAAGCGTGTGATGGCAATATTCCTAAAGCAGCCAGTTATTTGGACGTTAGCCCTTCAA
CTATCTACCGCAAGCTGCAAGCGTGGAACAGTAGAGAGAACTCATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.641

95.94

0.85
  pilR Pseudomonas aeruginosa PAK

38.178

98.504

0.376