Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GZI12_RS04150 Genome accession   NZ_AP019651
Coordinates   828934..830319 (+) Length   461 a.a.
NCBI ID   WP_162045875.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 823934..835319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS04135 - 824352..825665 (+) 1314 WP_162045873.1 anaerobic C4-dicarboxylate transporter family protein -
  GZI12_RS04145 uvrB 826586..828616 (+) 2031 WP_162045874.1 excinuclease ABC subunit UvrB -
  GZI12_RS04150 luxO 828934..830319 (+) 1386 WP_162045875.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GZI12_RS04155 luxU 830330..830671 (+) 342 WP_162045876.1 quorum-sensing phosphorelay protein LuxU -
  GZI12_RS04160 - 830710..831597 (-) 888 WP_162045877.1 YvcK family protein -
  GZI12_RS04165 moaA 831917..832906 (+) 990 WP_162045878.1 GTP 3',8-cyclase MoaA -
  GZI12_RS04170 moaB 832981..833493 (+) 513 WP_162045879.1 molybdenum cofactor biosynthesis protein B -
  GZI12_RS04175 moaC 833520..833999 (+) 480 WP_162045880.1 cyclic pyranopterin monophosphate synthase MoaC -
  GZI12_RS04180 moaD 833996..834241 (+) 246 WP_162045881.1 molybdopterin synthase sulfur carrier subunit -
  GZI12_RS04185 moaE 834243..834698 (+) 456 WP_162045882.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51466.19 Da        Isoelectric Point: 5.5508

>NTDB_id=73040 GZI12_RS04150 WP_162045875.1 828934..830319(+) (luxO) [Vibrio taketomensis strain C4III291]
MQRNTAQHKNKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLSFRTPDLILLDLRLPDMTGMDVLFEVKQQN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKTEEGLNQGYQGFIGSSQMMQAVYRTID
SAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGT
LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERG
EDVIEIAYSLLGFMSKEEGKDFVRLSPEVVDRFSRFEWPGNVRQLQNVLRNVVVLNNGKEIMLDMLPPPLNIPVCESMAP
SLLEKEVLSVHDIFPLWMTEKRAIEQAIQACDGNIPKAAGYLDVSPSTIYRKLQAWNDKQL

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=73040 GZI12_RS04150 WP_162045875.1 828934..830319(+) (luxO) [Vibrio taketomensis strain C4III291]
ATGCAGCGCAACACCGCTCAACATAAAAATAAATATTTACTGATGGTTGAGGATACCGCTTCCGTTGCGGCGCTCTACCG
TTCTTATCTTACGCCGCTAGGCATCGACATTAACATCGTCGGCACGGGCCGTGATGCTATTGAAAGTCTCTCTTTTCGCA
CTCCAGATCTGATTTTGCTCGATTTACGCCTACCTGATATGACGGGTATGGACGTGTTATTTGAAGTTAAACAGCAAAAT
CCGGATGTTCCAGTTATTTTCATGACCGCTCACGGTTCGATCGACACCGCCGTTGAAGCGATGCGTCACGGTGCTCAAGA
CTTTTTGATTAAGCCATGTGAGGCAGATCGCCTCAGGGTTACGGTCAATAATGCAATTCGTAAAGCGACCAAACTCAAAA
CAGAAGAAGGCCTCAACCAAGGCTATCAAGGTTTCATCGGCAGTAGCCAAATGATGCAGGCGGTGTATCGCACCATTGAC
TCCGCAGCAACCAGTAAAGCCAGTATTTTCATTACTGGAGAGAGTGGTACCGGTAAAGAAGTATGTGCGGAGGCCATTCA
CGCAACGAGTAAGCGCGGTGATAAACCGTTTATTGCCATTAACTGTGCAGCGATTCCAAAAGACCTGATTGAGAGTGAGT
TGTTTGGACACGTAAAAGGTGCGTTTACTGGTGCCGCAACGGATCGTCAAGGCGCGGCTGAACTTGCTGATGGTGGTACG
TTGTTCCTCGATGAATTGTGTGAAATGGATTTGGATCTGCAAACCAAATTACTGCGCTTTATTCAAACGGGTACTTTCCA
AAAAGTCGGCTCATCTAAGATGAAAAGCGTTGATGTGCGTTTTGTTTGTGCAACTAACCGTGACCCATGGAAGGAAGTGC
AAGAAGGCCGTTTTCGTGAAGACTTGTACTATCGTTTATACGTTATTCCATTGCATTTGCCGCCATTGCGTGAACGTGGT
GAAGATGTGATTGAAATTGCCTACTCGCTACTTGGCTTTATGTCGAAAGAAGAGGGCAAGGACTTTGTGCGCCTCTCGCC
TGAAGTTGTCGATCGCTTTTCTCGATTTGAGTGGCCGGGGAACGTGCGTCAATTGCAAAACGTTTTACGTAATGTGGTGG
TGCTCAATAATGGCAAAGAAATCATGCTCGATATGCTGCCACCGCCGCTAAATATTCCAGTGTGCGAGAGTATGGCACCT
TCATTGCTAGAGAAGGAAGTTTTGTCGGTACATGATATCTTTCCACTGTGGATGACGGAAAAGCGTGCTATTGAGCAAGC
CATTCAAGCTTGTGATGGCAACATTCCAAAAGCTGCGGGCTATTTAGATGTCAGCCCATCGACGATTTACCGAAAATTGC
AAGCCTGGAATGACAAGCAACTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.801

96.963

0.842
  pilR Pseudomonas aeruginosa PAK

37.472

96.095

0.36

Multiple sequence alignment