Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Vt282_RS09745 Genome accession   NZ_AP019649
Coordinates   2146900..2148285 (-) Length   461 a.a.
NCBI ID   WP_162045875.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2141900..2153285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS09705 - 2141903..2142319 (-) 417 WP_162045883.1 CBS domain-containing protein -
  Vt282_RS09710 moaE 2142522..2142977 (-) 456 WP_162063266.1 molybdopterin synthase catalytic subunit MoaE -
  Vt282_RS09715 moaD 2142979..2143224 (-) 246 WP_162063267.1 molybdopterin synthase sulfur carrier subunit -
  Vt282_RS09720 moaC 2143221..2143700 (-) 480 WP_162063268.1 cyclic pyranopterin monophosphate synthase MoaC -
  Vt282_RS09725 moaB 2143727..2144239 (-) 513 WP_162045879.1 molybdenum cofactor biosynthesis protein B -
  Vt282_RS09730 moaA 2144314..2145303 (-) 990 WP_162045878.1 GTP 3',8-cyclase MoaA -
  Vt282_RS09735 - 2145622..2146509 (+) 888 WP_162063269.1 YvcK family protein -
  Vt282_RS09740 luxU 2146548..2146889 (-) 342 WP_162045876.1 quorum-sensing phosphorelay protein LuxU -
  Vt282_RS09745 luxO 2146900..2148285 (-) 1386 WP_162045875.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Vt282_RS09750 uvrB 2148602..2150632 (-) 2031 WP_162063270.1 excinuclease ABC subunit UvrB -
  Vt282_RS09760 - 2151553..2152866 (-) 1314 WP_162063271.1 anaerobic C4-dicarboxylate transporter family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51466.19 Da        Isoelectric Point: 5.5508

>NTDB_id=73017 Vt282_RS09745 WP_162045875.1 2146900..2148285(-) (luxO) [Vibrio taketomensis strain C4III282]
MQRNTAQHKNKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLSFRTPDLILLDLRLPDMTGMDVLFEVKQQN
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKTEEGLNQGYQGFIGSSQMMQAVYRTID
SAATSKASIFITGESGTGKEVCAEAIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGT
LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERG
EDVIEIAYSLLGFMSKEEGKDFVRLSPEVVDRFSRFEWPGNVRQLQNVLRNVVVLNNGKEIMLDMLPPPLNIPVCESMAP
SLLEKEVLSVHDIFPLWMTEKRAIEQAIQACDGNIPKAAGYLDVSPSTIYRKLQAWNDKQL

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=73017 Vt282_RS09745 WP_162045875.1 2146900..2148285(-) (luxO) [Vibrio taketomensis strain C4III282]
ATGCAGCGCAACACCGCTCAACATAAAAATAAATATTTACTGATGGTTGAGGATACCGCTTCCGTTGCGGCGCTCTACCG
TTCTTATCTTACGCCGCTAGGCATCGACATTAACATCGTCGGCACGGGCCGTGATGCTATTGAAAGTCTCTCTTTTCGCA
CCCCAGATCTGATTTTGCTCGATTTACGCCTACCTGATATGACGGGTATGGACGTGTTATTTGAAGTTAAACAGCAAAAT
CCGGATGTTCCGGTTATTTTCATGACCGCTCACGGTTCGATCGACACCGCCGTTGAAGCGATGCGTCACGGTGCTCAAGA
CTTTTTGATTAAGCCATGTGAGGCAGATCGCCTCAGGGTTACGGTCAATAATGCAATTCGTAAAGCGACCAAACTCAAAA
CAGAAGAAGGCCTCAACCAAGGCTATCAAGGTTTCATCGGCAGTAGCCAAATGATGCAGGCGGTGTATCGCACCATTGAC
TCAGCAGCAACCAGTAAAGCCAGTATTTTCATTACTGGTGAGAGTGGTACCGGTAAAGAAGTATGTGCGGAGGCAATTCA
CGCAACGAGTAAGCGTGGTGATAAACCGTTTATTGCCATTAACTGTGCAGCGATTCCCAAAGACCTGATTGAGAGTGAAT
TGTTTGGACACGTAAAAGGTGCGTTTACTGGTGCCGCAACGGATCGTCAAGGCGCGGCTGAACTTGCTGATGGTGGTACG
CTGTTCCTTGATGAATTGTGTGAAATGGATTTGGATCTGCAAACCAAATTACTGCGCTTTATTCAAACTGGTACTTTCCA
AAAAGTCGGCTCATCTAAGATGAAAAGCGTTGATGTGCGTTTTGTTTGTGCAACTAACCGTGACCCATGGAAGGAAGTGC
AAGAAGGCCGTTTTCGTGAAGACTTGTACTATCGTTTATACGTTATTCCATTGCATTTGCCGCCGTTGCGTGAACGTGGT
GAAGATGTAATTGAAATTGCCTACTCGCTACTTGGCTTTATGTCGAAAGAAGAGGGCAAGGACTTTGTGCGCCTCTCGCC
TGAAGTTGTCGATCGCTTTTCTCGCTTTGAGTGGCCGGGGAACGTGCGTCAATTGCAAAACGTTTTGCGTAATGTGGTGG
TGCTCAATAATGGCAAAGAAATCATGCTCGATATGCTGCCACCGCCGCTAAATATTCCAGTGTGCGAGAGTATGGCACCT
TCATTGCTAGAGAAGGAAGTTTTGTCGGTACATGATATCTTCCCACTGTGGATGACGGAAAAGCGTGCTATTGAGCAAGC
CATTCAAGCTTGTGATGGCAACATTCCAAAAGCTGCGGGCTATTTAGATGTCAGCCCATCGACGATTTACCGAAAATTGC
AAGCCTGGAATGACAAGCAACTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-311)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.801

96.963

0.842
  pilR Pseudomonas aeruginosa PAK

37.472

96.095

0.36

Multiple sequence alignment