Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NQS35_RS08650 Genome accession   NZ_CP104494
Coordinates   1801549..1802328 (+) Length   259 a.a.
NCBI ID   WP_265736943.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain Cw717     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1796549..1807328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS35_RS08630 (NQS35_08605) phaC 1797230..1799026 (-) 1797 WP_011001573.1 class I poly(R)-hydroxyalkanoic acid synthase -
  NQS35_RS08635 (NQS35_08610) - 1799310..1799540 (+) 231 WP_016721791.1 hypothetical protein -
  NQS35_RS08640 (NQS35_08615) pgeF 1799580..1800383 (-) 804 WP_019718721.1 peptidoglycan editing factor PgeF -
  NQS35_RS08645 (NQS35_08620) - 1800367..1801479 (-) 1113 WP_020832112.1 RluA family pseudouridine synthase -
  NQS35_RS08650 (NQS35_08625) comL 1801549..1802328 (+) 780 WP_265736943.1 outer membrane protein assembly factor BamD Machinery gene
  NQS35_RS08655 (NQS35_08630) - 1802406..1804547 (-) 2142 WP_011001568.1 ATP-dependent DNA helicase -
  NQS35_RS08660 (NQS35_08635) - 1804627..1804830 (-) 204 WP_011001567.1 DUF465 domain-containing protein -
  NQS35_RS08665 (NQS35_08640) - 1804870..1805586 (-) 717 WP_069079036.1 hypothetical protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29531.15 Da        Isoelectric Point: 6.7227

>NTDB_id=730034 NQS35_RS08650 WP_265736943.1 1801549..1802328(+) (comL) [Ralstonia pseudosolanacearum strain Cw717]
MAAGVACLAISACGIMPEQQDETAGWSANKLYSEAKDALDGGDYSKAVKYYEKLESRYPFGPFAQQAQIETAYANYKDGE
TAAALAAVDRFIQLHPNHPSVDYAYYLKGLINFNDNLGWLGRFSNQDLSERDPKAARAAYDAFKTLITRFPNSKYAPDAA
QRMQYIVNAMAEHEVQAARYYYRRGAYLAATNRAQEAIKDYDRAPAVEEGLYIMMKSYEALGMKDLRDDTERIIKQNYPN
SDFLLYGQRKKAKPWYQWW

Nucleotide


Download         Length: 780 bp        

>NTDB_id=730034 NQS35_RS08650 WP_265736943.1 1801549..1802328(+) (comL) [Ralstonia pseudosolanacearum strain Cw717]
TTGGCGGCGGGCGTTGCATGCCTCGCGATCTCGGCCTGCGGCATCATGCCGGAACAACAGGACGAGACCGCAGGCTGGTC
GGCCAACAAATTATATTCGGAAGCGAAGGACGCGCTCGACGGCGGCGACTACAGCAAGGCCGTCAAGTACTACGAAAAGC
TCGAGAGCCGCTATCCGTTCGGGCCCTTTGCCCAGCAGGCGCAGATCGAAACCGCCTACGCCAATTACAAGGACGGCGAA
ACCGCCGCCGCGCTGGCTGCGGTCGATCGCTTCATCCAGCTGCACCCGAATCACCCCAGCGTCGATTACGCCTACTACCT
CAAGGGCCTGATCAATTTCAACGACAACCTGGGCTGGCTGGGCCGCTTCTCCAACCAGGACCTGAGCGAGCGCGATCCGA
AGGCGGCCCGCGCCGCCTACGATGCGTTCAAGACGCTGATCACGCGTTTCCCGAACAGCAAGTACGCGCCGGACGCCGCG
CAGCGCATGCAGTACATCGTCAACGCGATGGCCGAGCATGAAGTGCAGGCCGCCCGCTACTACTACCGCCGCGGTGCCTA
CCTGGCCGCCACCAACCGCGCGCAGGAAGCCATCAAGGATTACGATCGCGCGCCGGCCGTGGAAGAAGGGCTGTACATCA
TGATGAAGTCCTACGAAGCGCTTGGCATGAAAGACCTGCGCGACGACACCGAGCGCATCATCAAGCAGAACTATCCGAAC
AGCGATTTCCTGCTGTACGGACAGCGCAAGAAGGCCAAGCCGTGGTACCAGTGGTGGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(28-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

49.412

98.456

0.486
  comL Neisseria gonorrhoeae MS11

47.843

98.456

0.471