Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   Vt282_RS02230 Genome accession   NZ_AP019649
Coordinates   455365..455976 (-) Length   203 a.a.
NCBI ID   WP_162062445.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 450365..460976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS02220 aceF 451673..453574 (+) 1902 WP_162062444.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  Vt282_RS02225 lpdA 453845..455275 (+) 1431 WP_162047167.1 dihydrolipoyl dehydrogenase -
  Vt282_RS02230 opaR 455365..455976 (-) 612 WP_162062445.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  Vt282_RS02235 hpt 456369..456899 (+) 531 WP_162047165.1 hypoxanthine phosphoribosyltransferase -
  Vt282_RS02240 can 457000..457668 (-) 669 WP_162047164.1 carbonate dehydratase -
  Vt282_RS02245 - 457912..459597 (+) 1686 WP_162062446.1 SulP family inorganic anion transporter -
  Vt282_RS02250 - 459842..460768 (+) 927 WP_162062447.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23472.70 Da        Isoelectric Point: 5.3266

>NTDB_id=73003 Vt282_RS02230 WP_162062445.1 455365..455976(-) (opaR) [Vibrio taketomensis strain C4III282]
MDSIAKRPRTRLSPTKRKQQLMDISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFLS
DNIDLDLHAKENLGNITNSMMTLVAEDCHWLKVWFEWSASTREEVWPLFVTTNRTNQLLVKNMFVKGQERGEVCDEYDPE
DLANLFHGICYSLFVQANRTTEHNDLVKLADTYLNMLCIYKKD

Nucleotide


Download         Length: 612 bp        

>NTDB_id=73003 Vt282_RS02230 WP_162062445.1 455365..455976(-) (opaR) [Vibrio taketomensis strain C4III282]
ATGGATTCAATTGCGAAAAGACCAAGAACCCGTCTTTCACCCACAAAGCGCAAGCAACAATTAATGGATATCTCTCTTGA
GGTATTTGCTCGTCGAGGTATTGGTCGTGGCGGACATGCCGATATTGCTGAAATCGCACAGGTTTCAGTGGCAACGGTAT
TTAACTATTTCCCAACTCGTGAAGATTTGGTCGATGATGTACTGACCTACGTTGTCCGCCAGTTCTCCAACTTCTTATCA
GACAATATCGATCTTGATCTGCACGCTAAAGAAAACCTCGGCAACATCACTAACTCGATGATGACGTTAGTGGCTGAAGA
TTGTCACTGGCTAAAAGTCTGGTTTGAATGGAGCGCATCGACTCGTGAAGAAGTGTGGCCATTGTTTGTAACCACTAACC
GAACCAACCAGCTACTGGTCAAAAACATGTTCGTGAAAGGCCAAGAACGTGGTGAAGTGTGTGATGAATATGATCCAGAA
GATCTCGCCAACTTATTCCACGGTATTTGCTACTCGCTGTTTGTACAAGCAAACCGTACTACCGAGCATAATGATTTAGT
TAAGTTGGCTGACACCTACTTAAACATGCTATGCATCTACAAGAAAGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

80.296

100

0.803
  hapR Vibrio cholerae C6706

73.367

98.03

0.719
  hapR Vibrio cholerae strain A1552

73.367

98.03

0.719

Multiple sequence alignment