Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4599_RS06825 Genome accession   NZ_CP104398
Coordinates   1350295..1350870 (+) Length   191 a.a.
NCBI ID   WP_003715685.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain AM_LB10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1345295..1355870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4599_RS06815 (N4599_06815) gyrA 1347247..1349769 (+) 2523 WP_419719954.1 DNA gyrase subunit A -
  N4599_RS06820 (N4599_06820) rpsF 1349963..1350259 (+) 297 WP_003712079.1 30S ribosomal protein S6 -
  N4599_RS06825 (N4599_06825) ssb 1350295..1350870 (+) 576 WP_003715685.1 single-stranded DNA-binding protein Machinery gene
  N4599_RS06830 (N4599_06830) rpsR 1350903..1351139 (+) 237 WP_003665240.1 30S ribosomal protein S18 -
  N4599_RS06835 (N4599_06835) - 1351213..1351395 (+) 183 WP_062813135.1 hypothetical protein -
  N4599_RS06840 (N4599_06840) - 1351520..1353541 (+) 2022 WP_003712021.1 DHH family phosphoesterase -
  N4599_RS06845 (N4599_06845) rplI 1353547..1353999 (+) 453 WP_003712030.1 50S ribosomal protein L9 -
  N4599_RS06850 (N4599_06850) dnaB 1354032..1355447 (+) 1416 WP_003712124.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20883.52 Da        Isoelectric Point: 4.7278

>NTDB_id=729572 N4599_RS06825 WP_003715685.1 1350295..1350870(+) (ssb) [Limosilactobacillus oris strain AM_LB10]
MINRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFVNCVIWRKSAENFSNFTHKGSLVGVEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQGGQQQPFNNGSNQPFAGQPQQQFGGNQPQTNNAPQGNPSSNNGFGGN
APANNDAPFSAGNTNNDGEQKIDVSDDELPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=729572 N4599_RS06825 WP_003715685.1 1350295..1350870(+) (ssb) [Limosilactobacillus oris strain AM_LB10]
ATGATTAATCGTGCAGTCTTAACTGGGCGTTTAACGAGAGATCCTGAGTTGCGGTACACGACGAGCGGGACAGCGGTAGT
ATCATTTACCCTGGCTGTTGACCGGCAATTCCGGAACCAGAACGGGGACCGGGACGCCGACTTTGTCAACTGCGTTATCT
GGCGTAAGTCCGCGGAAAACTTCAGTAACTTCACGCATAAGGGTTCCCTAGTGGGGGTCGAAGGCCGGATTCAAACCCGG
AACTACGAAAACCAGCAGGGTAACCGGGTATACGTTACCGAAGTCGTCGTTGATAACTTCGCATTGCTTGAACCCCGGCA
AAATGGCGGGATGAACCAGGGCGGTCAGCAACAACCATTTAACAATGGCAGCAATCAACCGTTTGCCGGTCAGCCCCAGC
AGCAATTCGGTGGTAATCAGCCACAGACTAATAATGCTCCTCAAGGGAATCCATCATCAAATAACGGCTTCGGTGGGAAC
GCCCCAGCCAATAACGATGCGCCTTTCTCTGCCGGCAATACGAATAATGACGGCGAACAAAAGATTGACGTGTCAGATGA
TGAATTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.184

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.832

100

0.518