Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   N4S13_RS08150 Genome accession   NZ_CP104392
Coordinates   1625005..1626048 (+) Length   347 a.a.
NCBI ID   WP_028020681.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain HG-5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620005..1631048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS08125 (N4S13_08125) - 1621937..1623049 (+) 1113 WP_028020683.1 CAP-associated domain-containing protein -
  N4S13_RS08130 (N4S13_08130) - 1623046..1623471 (+) 426 WP_010744915.1 YlbF family regulator -
  N4S13_RS08135 (N4S13_08135) - 1623458..1623805 (+) 348 WP_028020682.1 YlbG family protein -
  N4S13_RS08140 (N4S13_08140) rsmD 1623965..1624519 (+) 555 WP_010744913.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N4S13_RS08145 (N4S13_08145) coaD 1624521..1625015 (+) 495 WP_010744912.1 pantetheine-phosphate adenylyltransferase -
  N4S13_RS08150 (N4S13_08150) sepM 1625005..1626048 (+) 1044 WP_028020681.1 SepM family pheromone-processing serine protease Regulator
  N4S13_RS08155 (N4S13_08155) comEA 1626154..1626759 (+) 606 WP_028020680.1 helix-hairpin-helix domain-containing protein Machinery gene
  N4S13_RS08160 (N4S13_08160) - 1626920..1628101 (+) 1182 WP_028020679.1 MFS transporter -
  N4S13_RS08165 (N4S13_08165) - 1628470..1628961 (+) 492 WP_010744907.1 ComE operon protein 2 -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38204.92 Da        Isoelectric Point: 6.8884

>NTDB_id=729487 N4S13_RS08150 WP_028020681.1 1625005..1626048(+) (sepM) [Enterococcus raffinosus strain HG-5]
MKNNKLVKRLLLIFLALAVVACVIVPIPYYIEEPGETINLKELITVNDKKDENKGSFSLTSVGIRRATVFTALKAKIEPF
HEIISADELTGGASDDEYMQIQKFNMETSQNFAIEQALKLANRPYKMEYKGVYVLGVEKNSNFAGKISVGDTVTKADGKT
FTSSEDFMKYVKSQKVGQKMKVTYTHDGKTKEATEKLIKLPTDKKPGIGITLTDHTEIDSQDKVKVDAGDIGGPSAGLMF
TLEIYEQLVDKDLRHGEKIAGTGTINSEGEVGRIGGIDKKVASAAADKNKVFFAPDDEITKEMKEAQPGIKSNYEEAKAA
AKKLDTDMKIVPVKTVKDALEYLESMK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=729487 N4S13_RS08150 WP_028020681.1 1625005..1626048(+) (sepM) [Enterococcus raffinosus strain HG-5]
GTGAAAAATAATAAACTCGTCAAACGATTATTACTTATATTTTTAGCATTAGCAGTGGTGGCTTGTGTGATTGTACCGAT
TCCTTATTACATCGAGGAGCCAGGAGAGACAATCAATTTAAAAGAGTTGATTACAGTCAATGATAAAAAGGATGAAAACA
AAGGATCTTTTAGTTTAACCTCAGTTGGTATACGTCGAGCAACGGTTTTTACAGCTCTAAAAGCAAAAATTGAACCTTTT
CATGAAATTATTTCTGCTGATGAACTGACTGGCGGTGCTAGTGATGACGAATATATGCAGATTCAAAAATTCAATATGGA
AACGTCTCAAAATTTTGCAATTGAACAAGCTTTAAAATTAGCTAATAGACCTTATAAAATGGAGTACAAAGGGGTCTATG
TACTAGGTGTAGAGAAAAATTCAAATTTTGCTGGAAAAATTAGTGTTGGCGATACGGTTACAAAAGCAGATGGAAAAACA
TTTACCAGCAGCGAAGATTTTATGAAGTACGTAAAATCCCAAAAAGTCGGTCAAAAAATGAAAGTGACCTATACACATGA
TGGCAAAACAAAAGAAGCTACCGAGAAGTTGATTAAATTACCAACAGATAAAAAGCCCGGGATTGGAATTACTTTAACTG
ATCACACGGAGATTGACTCGCAGGATAAAGTGAAGGTGGATGCTGGTGATATCGGTGGACCTTCTGCTGGCTTAATGTTT
ACACTGGAAATTTATGAACAGCTCGTTGACAAGGATCTGCGTCACGGTGAGAAGATCGCTGGGACTGGAACGATTAATTC
TGAAGGAGAGGTCGGAAGAATTGGCGGGATTGATAAGAAGGTCGCTAGTGCAGCGGCGGATAAAAATAAGGTCTTTTTCG
CTCCTGATGATGAGATTACAAAAGAAATGAAGGAAGCACAACCAGGTATTAAATCCAATTATGAAGAAGCCAAAGCAGCA
GCTAAAAAGCTGGATACAGATATGAAGATAGTTCCAGTGAAGACAGTGAAGGATGCTTTAGAGTATTTGGAATCAATGAA
ATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(191-311)

PDZ domain (PDZ_2)

(128-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.275

99.424

0.49