Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   N4Q31_RS11365 Genome accession   NZ_CP104391
Coordinates   2229617..2229952 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2224617..2234952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS11345 (N4Q31_11345) gcvT 2225105..2226202 (-) 1098 WP_260774197.1 glycine cleavage system aminomethyltransferase GcvT -
  N4Q31_RS11350 (N4Q31_11350) - 2226754..2228424 (+) 1671 WP_260774199.1 DEAD/DEAH box helicase -
  N4Q31_RS11355 (N4Q31_11355) - 2228439..2229236 (+) 798 WP_260774201.1 YqhG family protein -
  N4Q31_RS11360 (N4Q31_11360) - 2229419..2229583 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  N4Q31_RS11365 (N4Q31_11365) sinR 2229617..2229952 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  N4Q31_RS11370 (N4Q31_11370) tasA 2230020..2230820 (-) 801 WP_039179929.1 biofilm matrix protein TasA -
  N4Q31_RS11375 (N4Q31_11375) sipW 2230878..2231450 (-) 573 WP_047202287.1 signal peptidase I SipW -
  N4Q31_RS11380 (N4Q31_11380) tapA 2231502..2232029 (-) 528 WP_059374880.1 amyloid fiber anchoring/assembly protein TapA -
  N4Q31_RS11385 (N4Q31_11385) - 2232329..2232607 (+) 279 WP_231120214.1 DUF3889 domain-containing protein -
  N4Q31_RS11390 (N4Q31_11390) - 2232641..2232835 (-) 195 WP_024718846.1 YqzE family protein -
  N4Q31_RS11395 (N4Q31_11395) - 2232895..2233278 (-) 384 WP_260774208.1 competence type IV pilus minor pilin ComGG -
  N4Q31_RS11400 (N4Q31_11400) comGF 2233275..2233805 (-) 531 WP_260774210.1 competence type IV pilus minor pilin ComGF -
  N4Q31_RS11405 (N4Q31_11405) comGE 2233714..2234031 (-) 318 WP_260774211.1 competence type IV pilus minor pilin ComGE -
  N4Q31_RS11410 (N4Q31_11410) comGD 2234015..2234461 (-) 447 WP_260774213.1 competence type IV pilus minor pilin ComGD -
  N4Q31_RS11415 (N4Q31_11415) comGC 2234454..2234747 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=729435 N4Q31_RS11365 WP_024422969.1 2229617..2229952(+) (sinR) [Bacillus safensis strain GX-H6]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=729435 N4Q31_RS11365 WP_024422969.1 2229617..2229952(+) (sinR) [Bacillus safensis strain GX-H6]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946