Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N4Q31_RS11180 Genome accession   NZ_CP104391
Coordinates   2197250..2198983 (-) Length   577 a.a.
NCBI ID   WP_126681610.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192250..2203983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS11160 (N4Q31_11160) - 2193127..2194227 (-) 1101 WP_251180467.1 Rap family tetratricopeptide repeat protein -
  N4Q31_RS11165 (N4Q31_11165) - 2194215..2194412 (-) 198 WP_047202271.1 hypothetical protein -
  N4Q31_RS11170 (N4Q31_11170) spo0A 2194684..2195487 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  N4Q31_RS11175 (N4Q31_11175) spoIVB 2195773..2197050 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  N4Q31_RS11180 (N4Q31_11180) recN 2197250..2198983 (-) 1734 WP_126681610.1 DNA repair protein RecN Machinery gene
  N4Q31_RS11185 (N4Q31_11185) ahrC 2199017..2199466 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  N4Q31_RS11190 (N4Q31_11190) - 2199836..2200690 (-) 855 WP_212043148.1 TlyA family RNA methyltransferase -
  N4Q31_RS11195 (N4Q31_11195) dxs 2200687..2202588 (-) 1902 WP_058838030.1 1-deoxy-D-xylulose-5-phosphate synthase -
  N4Q31_RS11200 (N4Q31_11200) - 2202739..2203635 (-) 897 WP_391509948.1 polyprenyl synthetase family protein -
  N4Q31_RS11205 (N4Q31_11205) - 2203619..2203879 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64709.54 Da        Isoelectric Point: 4.7748

>NTDB_id=729434 N4Q31_RS11180 WP_126681610.1 2197250..2198983(-) (recN) [Bacillus safensis strain GX-H6]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVASIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=729434 N4Q31_RS11180 WP_126681610.1 2197250..2198983(-) (recN) [Bacillus safensis strain GX-H6]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGATGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTTATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAAACGGCTCAAAAGCTAAGACAGCTGTCCGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCAGCGCAGTTAGAGCCGGGAGAAGATGAGCGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTAGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAATGATGATTTGAAAAAGCT
ATCTGAACAAGTATCGAATTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGCTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGCCATCTGCAGACGCT
CAAGAATAAACTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGATACAGCTTTTTCTATT
CGATATGCGCCTTTTGGAAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCGCAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCGCATCCATTATCTTCGATGAAGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTACAAAGTAGCATCTGGATCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCCGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCAAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTCACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756