Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   N4R43_RS01760 Genome accession   NZ_CP104388
Coordinates   302591..303082 (-) Length   163 a.a.
NCBI ID   WP_023190262.1    Uniprot ID   A0AAW7J4W6
Organism   Lactococcus lactis strain LJL7m20     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 297591..308082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4R43_RS01760 (N4R43_01760) comX 302591..303082 (-) 492 WP_023190262.1 hypothetical protein Regulator
  N4R43_RS01765 (N4R43_01765) ezrA 303338..305068 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  N4R43_RS01770 (N4R43_01770) tsf 305273..306301 (-) 1029 WP_317141378.1 translation elongation factor Ts -
  N4R43_RS01775 (N4R43_01775) rpsB 306423..307190 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19732.65 Da        Isoelectric Point: 5.8952

>NTDB_id=729319 N4R43_RS01760 WP_023190262.1 302591..303082(-) (comX) [Lactococcus lactis strain LJL7m20]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=729319 N4R43_RS01760 WP_023190262.1 302591..303082(-) (comX) [Lactococcus lactis strain LJL7m20]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761