Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   N4269_RS09080 Genome accession   NZ_CP104356
Coordinates   2011582..2012949 (-) Length   455 a.a.
NCBI ID   WP_001888250.1    Uniprot ID   Q9KT84
Organism   Vibrio cholerae strain PNUSAV001141     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2006582..2017949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS09045 (N4269_09045) moaE 2007295..2007756 (-) 462 WP_134986971.1 molybdopterin synthase catalytic subunit MoaE -
  N4269_RS09050 (N4269_09050) moaD 2007758..2008003 (-) 246 WP_000598589.1 molybdopterin synthase sulfur carrier subunit -
  N4269_RS09055 (N4269_09055) moaC 2008000..2008479 (-) 480 WP_000080912.1 cyclic pyranopterin monophosphate synthase MoaC -
  N4269_RS09060 (N4269_09060) moaB 2008490..2009002 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  N4269_RS09065 (N4269_09065) moaA 2009062..2010051 (-) 990 WP_000068564.1 GTP 3',8-cyclase MoaA -
  N4269_RS09070 (N4269_09070) - 2010358..2011248 (+) 891 WP_000061070.1 YvcK family protein -
  N4269_RS09075 (N4269_09075) luxU 2011237..2011578 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  N4269_RS09080 (N4269_09080) luxO 2011582..2012949 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  N4269_RS09085 (N4269_09085) uvrB 2013379..2015409 (-) 2031 WP_134986970.1 excinuclease ABC subunit UvrB -
  N4269_RS09095 (N4269_09095) rsxA 2016291..2016872 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  N4269_RS09100 (N4269_09100) rsxB 2016872..2017459 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50839.12 Da        Isoelectric Point: 5.5755

>NTDB_id=729055 N4269_RS09080 WP_001888250.1 2011582..2012949(-) (luxO) [Vibrio cholerae strain PNUSAV001141]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=729055 N4269_RS09080 WP_001888250.1 2011582..2012949(-) (luxO) [Vibrio cholerae strain PNUSAV001141]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CTGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAACCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACTAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGTTTTCGTGAAGATCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGTAACATTCCTCGCGCCGC
GACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

100

100

1
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38