Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   N4267_RS18040 Genome accession   NZ_CP104355
Coordinates   945571..946665 (-) Length   364 a.a.
NCBI ID   WP_113628575.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001140     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 940571..951665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS18030 (N4267_18030) - 942323..942988 (+) 666 WP_000268201.1 flagellar brake protein -
  N4267_RS18035 (N4267_18035) luxQ 942980..945553 (-) 2574 WP_134987611.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  N4267_RS18040 (N4267_18040) luxP 945571..946665 (-) 1095 WP_113628575.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  N4267_RS18045 (N4267_18045) traF 946877..948037 (-) 1161 WP_071178790.1 conjugal transfer protein TraF -
  N4267_RS18050 (N4267_18050) - 948139..948444 (-) 306 WP_134987612.1 GIY-YIG nuclease family protein -
  N4267_RS18055 (N4267_18055) - 948444..949094 (-) 651 WP_001025632.1 YceH family protein -
  N4267_RS18060 (N4267_18060) - 949136..949333 (-) 198 WP_001246073.1 hypothetical protein -
  N4267_RS18065 (N4267_18065) - 949521..949841 (+) 321 WP_001089529.1 DUF496 family protein -
  N4267_RS18070 (N4267_18070) - 950254..950505 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41348.04 Da        Isoelectric Point: 6.5074

>NTDB_id=729031 N4267_RS18040 WP_113628575.1 945571..946665(-) (luxP) [Vibrio cholerae strain PNUSAV001140]
MKRKLIFPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKTVPLVYSGDFEIVTKQDSAARVTELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=729031 N4267_RS18040 WP_113628575.1 945571..946665(-) (luxP) [Vibrio cholerae strain PNUSAV001140]
ATGAAAAGAAAGCTAATATTCCCGCTGTTTCTGATGGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTCATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAACTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTGGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGCATGAATGACGATACCGGCGTTGCCATGGCTGAA
GCGATAAAATGGGATTTAGAAGGAAAAACCGTACCTTTGGTGTATTCGGGCGATTTTGAAATTGTTACCAAGCAAGATTC
CGCTGCACGTGTTACAGAGCTGAAAGCCCGGGCTTTCCGTTATTCAGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

97.527

100

0.975