Detailed information NTG0728826

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: N4T35_RS09140
• Genome accession: NZ_CP104342
• Coordinates: 1813750..1814451 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594590.1
• Uniprot ID: A0A427R546
• Organism: Acinetobacter baumannii strain 2021CK-01300
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1808750..1819451

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4T35_RS09105 (N4T35_09105)	kdsB	1809273..1810034 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
N4T35_RS09110 (N4T35_09110)	-	1810046..1811026 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
N4T35_RS09115 (N4T35_09115)	-	1811038..1811379 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
N4T35_RS09120 (N4T35_09120)	-	1811397..1812170 (+)	774	WP_000497301.1	TatD family hydrolase	-
N4T35_RS09125 (N4T35_09125)	-	1812208..1812816 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
N4T35_RS09130 (N4T35_09130)	-	1812826..1813380 (+)	555	WP_000841373.1	type II secretion system protein	-
N4T35_RS09135 (N4T35_09135)	xcpV	1813370..1813750 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
N4T35_RS09140 (N4T35_09140)	xcpW	1813750..1814451 (+)	702	WP_000594590.1	type II secretion system minor pseudopilin GspJ	Machinery gene
N4T35_RS09145 (N4T35_09145)	gspK	1814451..1815410 (+)	960	WP_000301471.1	type II secretion system minor pseudopilin GspK	-
N4T35_RS09150 (N4T35_09150)	-	1815641..1816237 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
N4T35_RS09155 (N4T35_09155)	ung	1816288..1817001 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
N4T35_RS09160 (N4T35_09160)	-	1816998..1818122 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
N4T35_RS09165 (N4T35_09165)	tadA	1818129..1818632 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
N4T35_RS09170 (N4T35_09170)	-	1818702..1819145 (+)	444	WP_001246674.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26627.52 Da
• Isoelectric Point: 9.3468

>NTDB_id=728826 N4T35_RS09140 WP_000594590.1 1813750..1814451(+) (xcpW) [Acinetobacter baumannii strain 2021CK-01300]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=728826 N4T35_RS09140 WP_000594590.1 1813750..1814451(+) (xcpW) [Acinetobacter baumannii strain 2021CK-01300]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A427R546

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991