Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   N4T35_RS01585 Genome accession   NZ_CP104342
Coordinates   335182..335823 (+) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 2021CK-01300     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330182..340823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T35_RS01565 (N4T35_01565) - 330230..330562 (+) 333 WP_000169601.1 hypothetical protein -
  N4T35_RS01570 (N4T35_01570) - 330565..331389 (+) 825 WP_086242007.1 putative RNA methyltransferase -
  N4T35_RS01575 (N4T35_01575) ponA 331407..333962 (-) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  N4T35_RS01580 (N4T35_01580) pilM 334124..335182 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  N4T35_RS01585 (N4T35_01585) pilN 335182..335823 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  N4T35_RS01590 (N4T35_01590) pilO 335820..336560 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  N4T35_RS01595 (N4T35_01595) pilP 336571..337098 (+) 528 WP_000695058.1 pilus assembly protein PilP Machinery gene
  N4T35_RS01600 (N4T35_01600) pilQ 337161..339326 (+) 2166 WP_001017038.1 type IV pilus secretin PilQ family protein Machinery gene
  N4T35_RS01605 (N4T35_01605) aroK 339338..339907 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=728804 N4T35_RS01585 WP_000201227.1 335182..335823(+) (pilN) [Acinetobacter baumannii strain 2021CK-01300]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=728804 N4T35_RS01585 WP_000201227.1 335182..335823(+) (pilN) [Acinetobacter baumannii strain 2021CK-01300]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCT
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709