Detailed information NTG0728738

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N4T40_RS08185
• Genome accession: NZ_CP104335
• Coordinates: 1618928..1619788 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152284.1
• Uniprot ID: A0A3R9CN06
• Organism: Acinetobacter baumannii strain 2021CK-01408
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1613928..1624788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4T40_RS08160 (N4T40_08160)	-	1614858..1616129 (+)	1272	WP_000610365.1	tetratricopeptide repeat protein	-
N4T40_RS08165 (N4T40_08165)	-	1616206..1616532 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
N4T40_RS08170 (N4T40_08170)	rlmB	1616634..1617383 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
N4T40_RS08175 (N4T40_08175)	-	1617419..1618333 (+)	915	WP_000075011.1	DMT family transporter	-
N4T40_RS08180 (N4T40_08180)	coaE	1618330..1618926 (-)	597	WP_000874127.1	dephospho-CoA kinase	-
N4T40_RS08185 (N4T40_08185)	pilD	1618928..1619788 (-)	861	WP_001152284.1	A24 family peptidase	Machinery gene
N4T40_RS08190 (N4T40_08190)	pilC	1619788..1621014 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
N4T40_RS08195 (N4T40_08195)	pilB	1621044..1622756 (-)	1713	WP_001274984.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N4T40_RS08200 (N4T40_08200)	tpiA	1623047..1623841 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
N4T40_RS08205 (N4T40_08205)	secG	1623854..1624183 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32189.64 Da
• Isoelectric Point: 7.5058

>NTDB_id=728738 N4T40_RS08185 WP_001152284.1 1618928..1619788(-) (pilD) [Acinetobacter baumannii strain 2021CK-01408]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=728738 N4T40_RS08185 WP_001152284.1 1618928..1619788(-) (pilD) [Acinetobacter baumannii strain 2021CK-01408]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A3R9CN06

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437