Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   N3Z98_RS01965 Genome accession   NZ_CP104325
Coordinates   359518..360168 (-) Length   216 a.a.
NCBI ID   WP_066776533.1    Uniprot ID   A0A424Z180
Organism   Campylobacter hepaticus strain RBCL71delta     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 354518..365168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z98_RS01930 (N3Z98_01930) - 354824..355828 (+) 1005 WP_196914049.1 hypothetical protein -
  N3Z98_RS01935 (N3Z98_01935) - 355825..356586 (+) 762 WP_196914041.1 TlyA family RNA methyltransferase -
  N3Z98_RS01940 (N3Z98_01940) - 356552..357397 (+) 846 WP_083074264.1 bifunctional riboflavin kinase/FAD synthetase -
  N3Z98_RS01945 (N3Z98_01945) cmoA 357397..358104 (+) 708 WP_066776522.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  N3Z98_RS01950 (N3Z98_01950) - 358094..358309 (-) 216 WP_066776525.1 EexN family lipoprotein -
  N3Z98_RS01955 (N3Z98_01955) - 358306..358815 (-) 510 WP_196914040.1 EexN family lipoprotein -
  N3Z98_RS01960 (N3Z98_01960) - 358875..359507 (-) 633 WP_066776530.1 trimeric intracellular cation channel family protein -
  N3Z98_RS01965 (N3Z98_01965) CJE0566 359518..360168 (-) 651 WP_066776533.1 DNA/RNA non-specific endonuclease Regulator
  N3Z98_RS01970 (N3Z98_01970) nth 360165..360791 (-) 627 WP_066776535.1 endonuclease III -
  N3Z98_RS01975 (N3Z98_01975) - 360872..361693 (+) 822 WP_066776537.1 peptidylprolyl isomerase -
  N3Z98_RS01980 (N3Z98_01980) fbaA 361693..362757 (+) 1065 WP_131952328.1 class II fructose-bisphosphate aldolase -
  N3Z98_RS01985 (N3Z98_01985) - 362858..364225 (+) 1368 WP_066776542.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25666.64 Da        Isoelectric Point: 9.8644

>NTDB_id=728617 N3Z98_RS01965 WP_066776533.1 359518..360168(-) (CJE0566) [Campylobacter hepaticus strain RBCL71delta]
MKILIVLLILYLKSFAFEHYKPSAEFASYFNPINCSQILDKFFYLNCYDYKLKGTKAIAYQVEAKNFKNKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFNFNKAAQNSVFLMSNITPQNEQINNKIWNEIEQKERILALKFHSIEVLN
LVLYDKNPQFIKNHIAIPFSYIKIIKTPKFKECYKVPNHEVENEDINKYKINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=728617 N3Z98_RS01965 WP_066776533.1 359518..360168(-) (CJE0566) [Campylobacter hepaticus strain RBCL71delta]
ATGAAAATATTGATTGTATTATTAATTTTATATTTAAAAAGTTTTGCCTTTGAACATTATAAACCTAGTGCTGAATTTGC
TTCTTATTTTAACCCTATTAATTGTTCTCAAATTTTAGATAAATTTTTTTATTTAAATTGTTACGATTATAAACTTAAAG
GCACTAAAGCCATAGCTTACCAAGTAGAAGCTAAAAATTTTAAAAATAAACAAATTAAAAAACGTCCACGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACCACATGGAGTGATTATAAAAATAGCGGCTACACACGAGGACATACCGCACC
AAATGCCTCATTTAATTTTAATAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCACAAAATGAACAAA
TTAATAATAAAATTTGGAATGAAATTGAACAAAAAGAGAGAATTTTGGCTTTAAAATTTCATAGCATTGAAGTTTTAAAT
CTAGTCCTTTATGATAAAAATCCACAATTTATTAAAAATCATATTGCTATACCTTTTTCTTATATTAAAATCATCAAAAC
CCCAAAATTTAAAGAATGTTATAAAGTGCCAAATCATGAAGTTGAAAACGAAGATATCAATAAATATAAAATAAATTGTG
ATAAATTTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(25-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z180

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.608

94.444

0.657
  CJE1441 Campylobacter jejuni RM1221

68.627

94.444

0.648