Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   N2K92_RS14445 Genome accession   NZ_CP104297
Coordinates   3042737..3043264 (-) Length   175 a.a.
NCBI ID   WP_071210840.1    Uniprot ID   A0A1S2G0K8
Organism   Acinetobacter baumannii strain ZHOU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037737..3048264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS14425 (N2K92_14440) - 3037921..3038796 (-) 876 WP_071210841.1 hypothetical protein -
  N2K92_RS14430 (N2K92_14445) aroB 3038812..3039894 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  N2K92_RS14435 (N2K92_14450) aroK 3039923..3040492 (-) 570 WP_000643712.1 shikimate kinase AroK -
  N2K92_RS14440 (N2K92_14455) pilQ 3040504..3042669 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  N2K92_RS14445 (N2K92_14460) pilP 3042737..3043264 (-) 528 WP_071210840.1 pilus assembly protein PilP Machinery gene
  N2K92_RS14450 (N2K92_14465) pilO 3043275..3044015 (-) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  N2K92_RS14455 (N2K92_14470) pilN 3044012..3044653 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  N2K92_RS14460 (N2K92_14475) pilM 3044653..3045711 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19435.68 Da        Isoelectric Point: 8.9898

>NTDB_id=728435 N2K92_RS14445 WP_071210840.1 3042737..3043264(-) (pilP) [Acinetobacter baumannii strain ZHOU]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYLNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=728435 N2K92_RS14445 WP_071210840.1 3042737..3043264(-) (pilP) [Acinetobacter baumannii strain ZHOU]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCTGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2G0K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709