Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   N2K92_RS14455 Genome accession   NZ_CP104297
Coordinates   3044012..3044653 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain ZHOU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3039012..3049653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS14435 (N2K92_14450) aroK 3039923..3040492 (-) 570 WP_000643712.1 shikimate kinase AroK -
  N2K92_RS14440 (N2K92_14455) pilQ 3040504..3042669 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  N2K92_RS14445 (N2K92_14460) pilP 3042737..3043264 (-) 528 WP_071210840.1 pilus assembly protein PilP Machinery gene
  N2K92_RS14450 (N2K92_14465) pilO 3043275..3044015 (-) 741 WP_049581056.1 type 4a pilus biogenesis protein PilO Machinery gene
  N2K92_RS14455 (N2K92_14470) pilN 3044012..3044653 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  N2K92_RS14460 (N2K92_14475) pilM 3044653..3045711 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  N2K92_RS14465 (N2K92_14480) ponA 3045873..3048428 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  N2K92_RS14470 (N2K92_14485) - 3048446..3049270 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  N2K92_RS14475 (N2K92_14490) - 3049273..3049605 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=728437 N2K92_RS14455 WP_000201223.1 3044012..3044653(-) (pilN) [Acinetobacter baumannii strain ZHOU]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=728437 N2K92_RS14455 WP_000201223.1 3044012..3044653(-) (pilN) [Acinetobacter baumannii strain ZHOU]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704