Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N2K92_RS14325 Genome accession   NZ_CP104297
Coordinates   3016339..3017157 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ZHOU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3011339..3022157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS14310 (N2K92_14325) pilE 3011556..3011981 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  N2K92_RS14315 (N2K92_14330) pilY2 3011978..3012460 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  N2K92_RS14320 (N2K92_14335) pilY1 3012473..3016327 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  N2K92_RS14325 (N2K92_14340) pilX 3016339..3017157 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N2K92_RS14330 (N2K92_14345) pilW 3017154..3018155 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  N2K92_RS14335 (N2K92_14350) pilV 3018156..3018716 (-) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  N2K92_RS14340 (N2K92_14355) fimU 3018710..3019183 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  N2K92_RS14345 (N2K92_14360) ispH 3019353..3020303 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N2K92_RS14350 (N2K92_14365) gmk 3020426..3021055 (+) 630 WP_000015937.1 guanylate kinase -
  N2K92_RS14355 (N2K92_14370) rpoZ 3021128..3021406 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N2K92_RS14360 (N2K92_14375) - 3021445..3021575 (+) 131 Protein_2815 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=728429 N2K92_RS14325 WP_000149374.1 3016339..3017157(-) (pilX) [Acinetobacter baumannii strain ZHOU]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=728429 N2K92_RS14325 WP_000149374.1 3016339..3017157(-) (pilX) [Acinetobacter baumannii strain ZHOU]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGCCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993