Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   N2K92_RS14340 Genome accession   NZ_CP104297
Coordinates   3018710..3019183 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain ZHOU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013710..3024183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K92_RS14325 (N2K92_14340) pilX 3016339..3017157 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N2K92_RS14330 (N2K92_14345) pilW 3017154..3018155 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  N2K92_RS14335 (N2K92_14350) pilV 3018156..3018716 (-) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  N2K92_RS14340 (N2K92_14355) fimU 3018710..3019183 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  N2K92_RS14345 (N2K92_14360) ispH 3019353..3020303 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N2K92_RS14350 (N2K92_14365) gmk 3020426..3021055 (+) 630 WP_000015937.1 guanylate kinase -
  N2K92_RS14355 (N2K92_14370) rpoZ 3021128..3021406 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N2K92_RS14360 (N2K92_14375) - 3021445..3021575 (+) 131 Protein_2815 hypothetical protein -
  N2K92_RS14365 (N2K92_14380) - 3021615..3023720 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=728432 N2K92_RS14340 WP_001214059.1 3018710..3019183(-) (fimU) [Acinetobacter baumannii strain ZHOU]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=728432 N2K92_RS14340 WP_001214059.1 3018710..3019183(-) (fimU) [Acinetobacter baumannii strain ZHOU]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994