Detailed information NTG0728400

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N4Q44_RS17260
• Genome accession: NZ_CP104295
• Coordinates: 3652010..3652870 (+)
• Length: 286 a.a.
• NCBI ID: WP_045544616.1
• Uniprot ID: A0A1S2G4K1
• Organism: Acinetobacter baumannii strain DETAB-C9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3647010..3657870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4Q44_RS17240 (N4Q44_17250)	secG	3647615..3647944 (-)	330	WP_045544614.1	preprotein translocase subunit SecG	-
N4Q44_RS17245 (N4Q44_17255)	tpiA	3647957..3648751 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
N4Q44_RS17250 (N4Q44_17260)	pilB	3649042..3650754 (+)	1713	WP_045544615.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N4Q44_RS17255 (N4Q44_17265)	pilC	3650784..3652010 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
N4Q44_RS17260 (N4Q44_17270)	pilD	3652010..3652870 (+)	861	WP_045544616.1	A24 family peptidase	Machinery gene
N4Q44_RS17265 (N4Q44_17275)	coaE	3652872..3653468 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
N4Q44_RS17270 (N4Q44_17280)	-	3653465..3654379 (-)	915	WP_000075014.1	DMT family transporter	-
N4Q44_RS17275 (N4Q44_17285)	rlmB	3654415..3655164 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
N4Q44_RS17280 (N4Q44_17290)	-	3655266..3655592 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
N4Q44_RS17285 (N4Q44_17295)	-	3655669..3656979 (-)	1311	WP_049590048.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32102.55 Da
• Isoelectric Point: 7.1041

>NTDB_id=728400 N4Q44_RS17260 WP_045544616.1 3652010..3652870(+) (pilD) [Acinetobacter baumannii strain DETAB-C9]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=728400 N4Q44_RS17260 WP_045544616.1 3652010..3652870(+) (pilD) [Acinetobacter baumannii strain DETAB-C9]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A1S2G4K1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	54.412	95.105	0.517
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441