Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   N4Q44_RS01955 Genome accession   NZ_CP104295
Coordinates   412763..413398 (-) Length   211 a.a.
NCBI ID   WP_000472270.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407763..418398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS01920 (N4Q44_01920) mlaE 408100..408876 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  N4Q44_RS01925 (N4Q44_01925) - 408876..409556 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  N4Q44_RS01930 (N4Q44_01930) - 409583..410224 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  N4Q44_RS01935 (N4Q44_01935) - 410236..410523 (+) 288 WP_000250997.1 STAS domain-containing protein -
  N4Q44_RS01940 (N4Q44_01940) - 410592..411605 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  N4Q44_RS01945 (N4Q44_01945) - 411763..412344 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  N4Q44_RS01950 (N4Q44_01950) - 412359..412760 (+) 402 WP_071210856.1 NUDIX domain-containing protein -
  N4Q44_RS01955 (N4Q44_01955) comF 412763..413398 (-) 636 WP_000472270.1 phosphoribosyltransferase family protein Machinery gene
  N4Q44_RS01960 (N4Q44_01960) recG 413391..415436 (-) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  N4Q44_RS01965 (N4Q44_01965) - 415457..416272 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  N4Q44_RS01970 (N4Q44_01970) adeT2 416352..417338 (+) 987 WP_071210857.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24581.75 Da        Isoelectric Point: 9.5738

>NTDB_id=728375 N4Q44_RS01955 WP_000472270.1 412763..413398(-) (comF) [Acinetobacter baumannii strain DETAB-C9]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALCQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=728375 N4Q44_RS01955 WP_000472270.1 412763..413398(-) (comF) [Acinetobacter baumannii strain DETAB-C9]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAACTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGGTTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTATG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986