Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   N4Q44_RS01590 Genome accession   NZ_CP104295
Coordinates   336285..337103 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331285..342103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS01555 (N4Q44_01555) - 331867..331997 (-) 131 Protein_296 hypothetical protein -
  N4Q44_RS01560 (N4Q44_01560) rpoZ 332036..332314 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4Q44_RS01565 (N4Q44_01565) gmk 332387..333016 (-) 630 WP_000015937.1 guanylate kinase -
  N4Q44_RS01570 (N4Q44_01570) ispH 333139..334089 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4Q44_RS01575 (N4Q44_01575) fimU 334259..334732 (+) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  N4Q44_RS01580 (N4Q44_01580) pilV 334726..335286 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  N4Q44_RS01585 (N4Q44_01585) pilW 335287..336288 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  N4Q44_RS01590 (N4Q44_01590) pilX 336285..337103 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  N4Q44_RS01595 (N4Q44_01595) pilY1 337115..340969 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  N4Q44_RS01600 (N4Q44_01600) pilY2 340982..341464 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  N4Q44_RS01605 (N4Q44_01605) pilE 341461..341886 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=728371 N4Q44_RS01590 WP_000149374.1 336285..337103(+) (pilX) [Acinetobacter baumannii strain DETAB-C9]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=728371 N4Q44_RS01590 WP_000149374.1 336285..337103(+) (pilX) [Acinetobacter baumannii strain DETAB-C9]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGCCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993