Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   N4Q44_RS01580 Genome accession   NZ_CP104295
Coordinates   334726..335286 (+) Length   186 a.a.
NCBI ID   WP_086300325.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-C9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329726..340286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q44_RS01555 (N4Q44_01555) - 331867..331997 (-) 131 Protein_296 hypothetical protein -
  N4Q44_RS01560 (N4Q44_01560) rpoZ 332036..332314 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  N4Q44_RS01565 (N4Q44_01565) gmk 332387..333016 (-) 630 WP_000015937.1 guanylate kinase -
  N4Q44_RS01570 (N4Q44_01570) ispH 333139..334089 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  N4Q44_RS01575 (N4Q44_01575) fimU 334259..334732 (+) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  N4Q44_RS01580 (N4Q44_01580) pilV 334726..335286 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  N4Q44_RS01585 (N4Q44_01585) pilW 335287..336288 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  N4Q44_RS01590 (N4Q44_01590) pilX 336285..337103 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20176.15 Da        Isoelectric Point: 8.2247

>NTDB_id=728369 N4Q44_RS01580 WP_086300325.1 334726..335286(+) (pilV) [Acinetobacter baumannii strain DETAB-C9]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASTEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=728369 N4Q44_RS01580 WP_086300325.1 334726..335286(+) (pilV) [Acinetobacter baumannii strain DETAB-C9]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAACTAAGAGCTATGGATGCCTCTACAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGTCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414