Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GDK20_RS08380 Genome accession   NZ_AP019545
Coordinates   1703286..1703972 (-) Length   228 a.a.
NCBI ID   WP_152064742.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-22     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698286..1708972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS08360 (SAKG22_15700) rpsT 1699200..1699451 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  GDK20_RS08365 (SAKG22_15710) holA 1699496..1700470 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  GDK20_RS08370 (SAKG22_15720) comEC 1700527..1702728 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GDK20_RS08375 (SAKG22_15730) - 1702733..1703194 (-) 462 WP_000439693.1 ComE operon protein 2 -
  GDK20_RS08380 (SAKG22_15740) comEA 1703286..1703972 (-) 687 WP_152064742.1 ComEA family DNA-binding protein Machinery gene
  GDK20_RS08385 (SAKG22_15750) - 1704012..1704728 (-) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  GDK20_RS08390 (SAKG22_15760) rsfS 1704731..1705084 (-) 354 WP_001088020.1 ribosome silencing factor -
  GDK20_RS08395 (SAKG22_15770) yqeK 1705085..1705669 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GDK20_RS08400 (SAKG22_15780) nadD 1705659..1706228 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  GDK20_RS08405 (SAKG22_15790) yhbY 1706231..1706521 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  GDK20_RS08410 (SAKG22_15800) aroE 1706525..1707331 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  GDK20_RS08415 (SAKG22_15810) yqeH 1707345..1708445 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25886.62 Da        Isoelectric Point: 9.6751

>NTDB_id=72821 GDK20_RS08380 WP_152064742.1 1703286..1703972(-) (comEA) [Staphylococcus aureus strain KG-22]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIDVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=72821 GDK20_RS08380 WP_152064742.1 1703286..1703972(-) (comEA) [Staphylococcus aureus strain KG-22]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGATGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.561

100

0.996
  comEA Staphylococcus aureus MW2

97.368

100

0.974

Multiple sequence alignment