Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GDK20_RS08140 Genome accession   NZ_AP019545
Coordinates   1656598..1657044 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1654774..1655946 1656598..1657044 flank 652


Gene organization within MGE regions


Location: 1654774..1657044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS08125 (SAKG22_15230) - 1654774..1655946 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  GDK20_RS08130 (SAKG22_15240) - 1655996..1656394 (-) 399 Protein_1569 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GDK20_RS08135 (SAKG22_15250) comGE 1656312..1656611 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  GDK20_RS08140 (SAKG22_15260) comGD 1656598..1657044 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=72815 GDK20_RS08140 WP_001788899.1 1656598..1657044(-) (comGD) [Staphylococcus aureus strain KG-22]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=72815 GDK20_RS08140 WP_001788899.1 1656598..1657044(-) (comGD) [Staphylococcus aureus strain KG-22]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment