Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   GDK20_RS08135 Genome accession   NZ_AP019545
Coordinates   1656312..1656611 (-) Length   99 a.a.
NCBI ID   WP_000844410.1    Uniprot ID   A0A7R6NZL1
Organism   Staphylococcus aureus strain KG-22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1654774..1655946 1656312..1656611 flank 366


Gene organization within MGE regions


Location: 1654774..1656611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS08125 (SAKG22_15230) - 1654774..1655946 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  GDK20_RS08130 (SAKG22_15240) - 1655996..1656394 (-) 399 Protein_1569 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GDK20_RS08135 (SAKG22_15250) comGE 1656312..1656611 (-) 300 WP_000844410.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11079.18 Da        Isoelectric Point: 9.9215

>NTDB_id=72814 GDK20_RS08135 WP_000844410.1 1656312..1656611(-) (comGE) [Staphylococcus aureus strain KG-22]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQSIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=72814 GDK20_RS08135 WP_000844410.1 1656312..1656611(-) (comGE) [Staphylococcus aureus strain KG-22]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAATCAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAATATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7R6NZL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus N315

100

100

1
  comGE Staphylococcus aureus MW2

85.965

100

0.99

Multiple sequence alignment