Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   GDK20_RS02750 Genome accession   NZ_AP019545
Coordinates   577998..578567 (+) Length   189 a.a.
NCBI ID   WP_000872882.1    Uniprot ID   A0A7U7EXA1
Organism   Staphylococcus aureus strain KG-22     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 572998..583567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS02725 (SAKG22_05080) cysE 574211..574858 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  GDK20_RS02730 (SAKG22_05090) cysS 574842..576242 (+) 1401 WP_152064709.1 cysteine--tRNA ligase -
  GDK20_RS02735 (SAKG22_05100) - 576235..576639 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  GDK20_RS02740 (SAKG22_05110) rlmB 576647..577393 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GDK20_RS02745 (SAKG22_05120) - 577393..577917 (+) 525 WP_000664737.1 NYN domain-containing protein -
  GDK20_RS02750 (SAKG22_05130) sigH 577998..578567 (+) 570 WP_000872882.1 RNA polymerase sigma factor Regulator
  GDK20_RS02755 rpmG 578682..578825 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  GDK20_RS02760 (SAKG22_05140) secE 578881..579063 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  GDK20_RS02765 (SAKG22_05150) nusG 579076..579624 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  GDK20_RS02770 (SAKG22_05160) rplK 579805..580227 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  GDK20_RS02775 (SAKG22_05170) rplA 580435..581127 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  GDK20_RS02785 (SAKG22_05180) rplJ 581399..581899 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  GDK20_RS02790 (SAKG22_05190) rplL 581942..582310 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  GDK20_RS02795 (SAKG22_05200) - 582485..583093 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.4170

>NTDB_id=72802 GDK20_RS02750 WP_000872882.1 577998..578567(+) (sigH) [Staphylococcus aureus strain KG-22]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=72802 GDK20_RS02750 WP_000872882.1 577998..578567(+) (sigH) [Staphylococcus aureus strain KG-22]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

100

100

1
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment