Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GDK18_RS08340 Genome accession   NZ_AP019543
Coordinates   1697277..1697963 (-) Length   228 a.a.
NCBI ID   WP_152064742.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-18     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692277..1702963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK18_RS08320 (SAKG18_15590) rpsT 1693191..1693442 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  GDK18_RS08325 (SAKG18_15600) holA 1693487..1694461 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  GDK18_RS08330 (SAKG18_15610) comEC 1694518..1696719 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GDK18_RS08335 (SAKG18_15620) - 1696724..1697185 (-) 462 WP_000439693.1 ComE operon protein 2 -
  GDK18_RS08340 (SAKG18_15630) comEA 1697277..1697963 (-) 687 WP_152064742.1 ComEA family DNA-binding protein Machinery gene
  GDK18_RS08345 (SAKG18_15640) - 1698003..1698719 (-) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  GDK18_RS08350 (SAKG18_15650) rsfS 1698722..1699075 (-) 354 WP_001088020.1 ribosome silencing factor -
  GDK18_RS08355 (SAKG18_15660) yqeK 1699076..1699660 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  GDK18_RS08360 (SAKG18_15670) nadD 1699650..1700219 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  GDK18_RS08365 (SAKG18_15680) yhbY 1700222..1700512 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  GDK18_RS08370 (SAKG18_15690) aroE 1700516..1701322 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  GDK18_RS08375 (SAKG18_15700) yqeH 1701336..1702436 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25886.62 Da        Isoelectric Point: 9.6751

>NTDB_id=72779 GDK18_RS08340 WP_152064742.1 1697277..1697963(-) (comEA) [Staphylococcus aureus strain KG-18]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIDVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=72779 GDK18_RS08340 WP_152064742.1 1697277..1697963(-) (comEA) [Staphylococcus aureus strain KG-18]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGATGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.561

100

0.996
  comEA Staphylococcus aureus MW2

97.368

100

0.974

Multiple sequence alignment