Detailed information NTG0727673

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N1708_RS21420
• Genome accession: NZ_CP104110
• Coordinates: 4389013..4389813 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain USDA-ARS-USMARC-52099
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4384013..4394813

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N1708_RS21385 (N1708_21385)	gspH	4384169..4384684 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
N1708_RS21390 (N1708_21390)	gspI	4384681..4385046 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
N1708_RS21395 (N1708_21395)	gspJ	4385043..4385639 (+)	597	WP_208524039.1	type II secretion system minor pseudopilin GspJ	-
N1708_RS21400 (N1708_21400)	gspK	4385636..4386622 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
N1708_RS21405 (N1708_21405)	gspL	4386609..4387802 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
N1708_RS21410 (N1708_21410)	-	4387795..4388280 (+)	486	WP_004151943.1	type II secretion system protein M	-
N1708_RS21415 (N1708_21415)	-	4388270..4389016 (+)	747	WP_004145897.1	type II secretion system protein N	-
N1708_RS21420 (N1708_21420)	pilD	4389013..4389813 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
N1708_RS21425 (N1708_21425)	hrpB	4389861..4392290 (-)	2430	WP_020317204.1	ATP-dependent helicase HrpB	-
N1708_RS21430 (N1708_21430)	thpR	4392363..4392899 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
N1708_RS21435 (N1708_21435)	sfsA	4392899..4393615 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
N1708_RS21440 (N1708_21440)	dksA	4393778..4394233 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=727673 N1708_RS21420 WP_002888947.1 4389013..4389813(+) (pilD) [Klebsiella pneumoniae strain USDA-ARS-USMARC-52099]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=727673 N1708_RS21420 WP_002888947.1 4389013..4389813(+) (pilD) [Klebsiella pneumoniae strain USDA-ARS-USMARC-52099]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425