Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   N0U38_RS22430 Genome accession   NZ_CP104107
Coordinates   4932066..4932932 (+) Length   288 a.a.
NCBI ID   WP_260270461.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain PH4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4915425..4934211 4932066..4932932 within 0


Gene organization within MGE regions


Location: 4915425..4934211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0U38_RS22365 (N0U38_22365) - 4915425..4916978 (-) 1554 WP_260270452.1 IS66 family transposase -
  N0U38_RS22370 (N0U38_22370) tnpB 4916997..4917356 (-) 360 WP_230384521.1 IS66 family insertion sequence element accessory protein TnpB -
  N0U38_RS22375 (N0U38_22375) - 4918338..4920494 (-) 2157 WP_260270453.1 hypothetical protein -
  N0U38_RS22380 (N0U38_22380) - 4920491..4921678 (-) 1188 WP_260270454.1 hypothetical protein -
  N0U38_RS22385 (N0U38_22385) - 4922258..4924147 (-) 1890 WP_260270455.1 hypothetical protein -
  N0U38_RS22390 (N0U38_22390) - 4924389..4924667 (-) 279 Protein_4431 hypothetical protein -
  N0U38_RS22395 (N0U38_22395) - 4924664..4925593 (-) 930 WP_260270456.1 integrase domain-containing protein -
  N0U38_RS22400 (N0U38_22400) - 4926126..4926509 (-) 384 WP_260270457.1 DCL family protein -
  N0U38_RS22405 (N0U38_22405) - 4926840..4927859 (-) 1020 WP_260270458.1 DUF4917 family protein -
  N0U38_RS22410 (N0U38_22410) - 4928608..4929444 (-) 837 WP_260270459.1 hypothetical protein -
  N0U38_RS22420 (N0U38_22420) - 4930217..4930627 (-) 411 WP_186599367.1 pilin -
  N0U38_RS22425 (N0U38_22425) - 4930855..4932063 (+) 1209 WP_260270460.1 type II secretion system F family protein -
  N0U38_RS22430 (N0U38_22430) pilD 4932066..4932932 (+) 867 WP_260270461.1 A24 family peptidase Machinery gene
  N0U38_RS22435 (N0U38_22435) coaE 4932932..4933555 (+) 624 WP_110739747.1 dephospho-CoA kinase -
  N0U38_RS22440 (N0U38_22440) yacG 4933552..4933752 (+) 201 WP_011535705.1 DNA gyrase inhibitor YacG -
  N0U38_RS22445 (N0U38_22445) - 4933963..4934211 (+) 249 WP_096049333.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31494.61 Da        Isoelectric Point: 7.2397

>NTDB_id=727623 N0U38_RS22430 WP_260270461.1 4932066..4932932(+) (pilD) [Pseudomonas mosselii strain PH4]
MNAWAVIVDNPPFFYALAAVLGLLVGSFLNVLAYRLPLMLERQWQREAQEVLGLPQAEHERFDLCLPASRCPHCQRPIRA
WENIPVLSYLALRGRCSGCKARISARYPLVELATALLSLLVAWHFGPGVEALAVMVLTWGLIGLSLIDAEHQLLPDVLVL
PLLWLGLVVNAFGLLVPLADAVWGAVAGYLSLWTVYWVFKLVTGKEGMGFGDFKLLAMLGAWGGWQVLPLTLMLASLVGA
LVGLTLVRLKRTQMGAALPFGPYLAIAGWIALLWGDEIVASYLQLLGT

Nucleotide


Download         Length: 867 bp        

>NTDB_id=727623 N0U38_RS22430 WP_260270461.1 4932066..4932932(+) (pilD) [Pseudomonas mosselii strain PH4]
ATGAATGCCTGGGCCGTAATCGTCGATAATCCGCCTTTCTTCTATGCCCTGGCCGCGGTGCTGGGGTTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGCGTATCGGCTGCCGCTGATGCTCGAGCGCCAGTGGCAGCGCGAGGCGCAGGAGGTGCTGGGGC
TGCCGCAGGCCGAGCACGAGCGCTTCGACCTGTGTTTGCCGGCTTCGCGTTGCCCCCATTGCCAGCGCCCGATCCGGGCG
TGGGAAAACATTCCGGTGTTGAGTTACCTGGCCTTGCGCGGGCGTTGCTCGGGGTGCAAGGCGCGGATCAGTGCGCGTTA
TCCACTGGTGGAGCTGGCCACCGCCCTGCTGTCGCTGCTGGTGGCCTGGCATTTCGGGCCGGGCGTGGAGGCGCTGGCGG
TGATGGTGCTGACCTGGGGGCTGATTGGTTTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGTGCTGGTGCTG
CCGCTGTTGTGGCTGGGGCTGGTGGTCAACGCCTTCGGGTTGCTGGTGCCGCTGGCCGATGCGGTGTGGGGCGCGGTGGC
GGGTTACCTGAGCCTGTGGACTGTGTACTGGGTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTTTGGCGACTTCA
AGCTGCTGGCCATGCTCGGGGCCTGGGGCGGTTGGCAGGTTTTGCCGCTGACCTTGATGCTGGCCTCCTTGGTAGGGGCG
CTGGTCGGGCTGACGCTGGTGCGTTTGAAGCGCACGCAAATGGGCGCTGCGCTGCCTTTCGGGCCTTATCTGGCTATTGC
GGGGTGGATCGCATTGCTCTGGGGTGATGAAATAGTCGCTTCTTACCTGCAACTGCTTGGAACCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.755

96.528

0.538
  pilD Acinetobacter baumannii D1279779

51.246

97.569

0.5
  pilD Acinetobacter nosocomialis M2

50.178

97.569

0.49
  pilD Neisseria gonorrhoeae MS11

51.673

93.403

0.483
  pilD Vibrio campbellii strain DS40M4

50.362

95.833

0.483