Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N0U38_RS19180 Genome accession   NZ_CP104107
Coordinates   4218266..4218901 (-) Length   211 a.a.
NCBI ID   WP_084942595.1    Uniprot ID   -
Organism   Pseudomonas mosselii strain PH4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4213266..4223901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0U38_RS19150 (N0U38_19150) murB 4214370..4215389 (-) 1020 WP_260270263.1 UDP-N-acetylmuramate dehydrogenase -
  N0U38_RS19155 (N0U38_19155) - 4215386..4215850 (-) 465 WP_260270264.1 low molecular weight protein-tyrosine-phosphatase -
  N0U38_RS19160 (N0U38_19160) kdsB 4215850..4216614 (-) 765 WP_096048370.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N0U38_RS19165 (N0U38_19165) - 4216611..4216796 (-) 186 WP_011532874.1 Trm112 family protein -
  N0U38_RS19170 (N0U38_19170) lpxK 4216831..4217835 (-) 1005 WP_062573277.1 tetraacyldisaccharide 4'-kinase -
  N0U38_RS19175 (N0U38_19175) - 4217835..4218269 (-) 435 WP_028690977.1 biopolymer transporter ExbD -
  N0U38_RS19180 (N0U38_19180) exbB 4218266..4218901 (-) 636 WP_084942595.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N0U38_RS19185 (N0U38_19185) comA 4219053..4221269 (-) 2217 WP_260270265.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N0U38_RS19190 (N0U38_19190) - 4221414..4222055 (+) 642 WP_143514950.1 DUF2062 domain-containing protein -
  N0U38_RS19195 (N0U38_19195) - 4221939..4222718 (-) 780 WP_062573274.1 ABC transporter permease -
  N0U38_RS19200 (N0U38_19200) - 4222715..4223647 (-) 933 WP_062573273.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.17 Da        Isoelectric Point: 7.3616

>NTDB_id=727620 N0U38_RS19180 WP_084942595.1 4218266..4218901(-) (exbB) [Pseudomonas mosselii strain PH4]
MWELVKSGGWMMLPIILSSIAAMAIVIERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=727620 N0U38_RS19180 WP_084942595.1 4218266..4218901(-) (exbB) [Pseudomonas mosselii strain PH4]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCCGCCATGGCGATCGTCAT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTCGCCGCGGGCCTGGCCAAC
TCGCGCCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCCTCTCGGGTCATCCACGAGCTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTCCTGGCCGGGGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGCTGCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825