Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   N1207_RS20425 Genome accession   NZ_CP104097
Coordinates   3904924..3905043 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain GL-4     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3899924..3910043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS20405 (N1207_20405) albG 3900088..3900789 (+) 702 WP_043940223.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  N1207_RS20410 (N1207_20410) ywhL 3900794..3902170 (-) 1377 WP_043940224.1 YncE family protein -
  N1207_RS20415 (N1207_20415) ywhK 3902210..3903565 (-) 1356 WP_043940225.1 YncE family protein -
  N1207_RS20420 (N1207_20420) rapF 3903795..3904940 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  N1207_RS20425 (N1207_20425) phrF 3904924..3905043 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  N1207_RS20430 (N1207_20430) - 3905296..3905775 (+) 480 WP_015714892.1 hypothetical protein -
  N1207_RS20435 (N1207_20435) - 3905924..3906712 (+) 789 WP_015714893.1 membrane protein -
  N1207_RS20440 (N1207_20440) - 3906699..3907373 (+) 675 WP_015714894.1 hypothetical protein -
  N1207_RS20445 (N1207_20445) - 3907383..3908180 (+) 798 WP_231573542.1 hypothetical protein -
  N1207_RS20450 (N1207_20450) - 3908183..3908830 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  N1207_RS20455 (N1207_20455) - 3908823..3909383 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=727598 N1207_RS20425 WP_009968329.1 3904924..3905043(+) (phrF) [Bacillus subtilis strain GL-4]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=727598 N1207_RS20425 WP_009968329.1 3904924..3905043(+) (phrF) [Bacillus subtilis strain GL-4]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487