Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GDK21_RS11440 Genome accession   NZ_AP019542
Coordinates   2245629..2246024 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2240629..2251024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK21_RS11415 (SAKG03_20900) thiE 2241228..2241869 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  GDK21_RS11420 (SAKG03_20910) thiM 2241871..2242662 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  GDK21_RS11425 (SAKG03_20920) thiD 2242646..2243476 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GDK21_RS11430 (SAKG03_20930) tenA 2243469..2244158 (-) 690 WP_000396077.1 thiaminase II -
  GDK21_RS11435 (SAKG03_20950) sceD 2244545..2245240 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  GDK21_RS11440 (SAKG03_20960) ssb 2245629..2246024 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  GDK21_RS11445 (SAKG03_20970) - 2246218..2246658 (+) 441 WP_000846746.1 YwpF-like family protein -
  GDK21_RS11450 (SAKG03_20980) fabZ 2246717..2247157 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GDK21_RS11455 (SAKG03_20990) murA 2247191..2248456 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GDK21_RS11460 (SAKG03_21000) - 2248567..2248800 (-) 234 WP_000384523.1 DUF1146 family protein -
  GDK21_RS11465 - 2248932..2249024 (-) 93 WP_001790611.1 hypothetical protein -
  GDK21_RS11470 (SAKG03_21010) - 2249362..2249766 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=72747 GDK21_RS11440 WP_000932694.1 2245629..2246024(-) (ssb) [Staphylococcus aureus strain KG-03]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=72747 GDK21_RS11440 WP_000932694.1 2245629..2246024(-) (ssb) [Staphylococcus aureus strain KG-03]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment