Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   N2A94_RS03030 Genome accession   NZ_CP104048
Coordinates   585676..586905 (+) Length   409 a.a.
NCBI ID   WP_003103169.1    Uniprot ID   A0A0E2URT0
Organism   Streptococcus parauberis strain KSP20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 580676..591905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS03010 (N2A94_03010) - 581402..582685 (-) 1284 WP_013793856.1 hydroxymethylglutaryl-CoA reductase, degradative -
  N2A94_RS03015 (N2A94_03015) - 582682..583848 (-) 1167 WP_003104825.1 hydroxymethylglutaryl-CoA synthase -
  N2A94_RS03020 (N2A94_03020) - 584040..584879 (+) 840 WP_003106617.1 thymidylate synthase -
  N2A94_RS03025 (N2A94_03025) - 584956..585471 (+) 516 WP_003104878.1 dihydrofolate reductase -
  N2A94_RS03030 (N2A94_03030) clpX 585676..586905 (+) 1230 WP_003103169.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  N2A94_RS03035 (N2A94_03035) yihA 586914..587513 (+) 600 WP_003106619.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  N2A94_RS03040 (N2A94_03040) - 587678..588343 (+) 666 WP_003106620.1 hypothetical protein -
  N2A94_RS03045 (N2A94_03045) clpC 588366..590474 (-) 2109 WP_013793858.1 AAA family ATPase Regulator
  N2A94_RS03050 (N2A94_03050) rplJ 590924..591424 (+) 501 WP_003104757.1 50S ribosomal protein L10 -
  N2A94_RS03055 (N2A94_03055) rplL 591490..591855 (+) 366 WP_003103838.1 50S ribosomal protein L7/L12 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45058.55 Da        Isoelectric Point: 4.4670

>NTDB_id=727345 N2A94_RS03030 WP_003103169.1 585676..586905(+) (clpX) [Streptococcus parauberis strain KSP20]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=727345 N2A94_RS03030 WP_003103169.1 585676..586905(+) (clpX) [Streptococcus parauberis strain KSP20]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACGGCATAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2URT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.797

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.359

98.044

0.553