Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P1X13_RS08910 Genome accession   NZ_CP119678
Coordinates   1826373..1827479 (+) Length   368 a.a.
NCBI ID   WP_011527822.1    Uniprot ID   Q1JJC0
Organism   Streptococcus pyogenes strain 1004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1821373..1832479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1X13_RS08890 (P1X13_08890) hasA 1822051..1823310 (+) 1260 WP_029714250.1 hyaluronan synthase HasA -
  P1X13_RS08895 (P1X13_08895) hasB 1823346..1824554 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  P1X13_RS08900 (P1X13_08900) hasC 1824736..1825650 (+) 915 WP_010922799.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  P1X13_RS08905 (P1X13_08905) yaaA 1825958..1826371 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  P1X13_RS08910 (P1X13_08910) recF 1826373..1827479 (+) 1107 WP_011527822.1 DNA replication/repair protein RecF Machinery gene
  P1X13_RS08915 (P1X13_08915) - 1827534..1828397 (-) 864 WP_002992310.1 GRP family sugar transporter -
  P1X13_RS08920 (P1X13_08920) guaB 1828600..1830081 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  P1X13_RS08925 (P1X13_08925) trpS 1830389..1831411 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41865.80 Da        Isoelectric Point: 7.8080

>NTDB_id=727316 P1X13_RS08910 WP_011527822.1 1826373..1827479(+) (recF) [Streptococcus pyogenes strain 1004]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLY
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=727316 P1X13_RS08910 WP_011527822.1 1826373..1827479(+) (recF) [Streptococcus pyogenes strain 1004]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTATAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JJC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462