Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2A93_RS08705 Genome accession   NZ_CP104046
Coordinates   1719626..1720123 (-) Length   165 a.a.
NCBI ID   WP_003103409.1    Uniprot ID   A0A0E2UEH7
Organism   Streptococcus parauberis strain KSP14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1714626..1725123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS08690 (N2A93_08690) - 1716725..1717669 (+) 945 WP_003105810.1 magnesium transporter CorA family protein -
  N2A93_RS08695 (N2A93_08695) - 1717754..1718419 (+) 666 WP_003107615.1 DUF1129 domain-containing protein -
  N2A93_RS08700 (N2A93_08700) rpsR 1719298..1719537 (-) 240 WP_003102945.1 30S ribosomal protein S18 -
  N2A93_RS08705 (N2A93_08705) ssb 1719626..1720123 (-) 498 WP_003103409.1 single-stranded DNA-binding protein Machinery gene
  N2A93_RS08710 (N2A93_08710) rpsF 1720144..1720434 (-) 291 WP_003104479.1 30S ribosomal protein S6 -
  N2A93_RS08715 (N2A93_08715) mutY 1721420..1722559 (+) 1140 WP_037622077.1 A/G-specific adenine glycosylase -
  N2A93_RS08720 (N2A93_08720) - 1722637..1722999 (+) 363 WP_003105722.1 hypothetical protein -
  N2A93_RS08725 (N2A93_08725) trxA 1723041..1723355 (-) 315 WP_003102914.1 thioredoxin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18163.89 Da        Isoelectric Point: 4.8894

>NTDB_id=727265 N2A93_RS08705 WP_003103409.1 1719626..1720123(-) (ssb) [Streptococcus parauberis strain KSP14]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSSNSYNGGGLNNNSSSSNNSYSAPAQQTPNFGRDDSPFGNSNPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=727265 N2A93_RS08705 WP_003103409.1 1719626..1720123(-) (ssb) [Streptococcus parauberis strain KSP14]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAAGATGCAGAACTTCGTTACACACCAAGTCAAGTGGCAGTAGC
TACTTTTACACTTGCTGTTAACCGTACATTCAAAAGTCAAAATGGGGAACGTGAAGCAGATTTCATTAACTGTGTAATCT
GGCGTCAACCAGCTGAGAACTTAGCGAATTGGGCTAAAAAGGGTGCTTTAGTTGGGATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTCTATGTAACTGAAGTGGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCATCTAACTCTTATAATGGTGGTGGATTAAATAATAATTCTTCATCATCAAACAATAGTTACT
CAGCCCCTGCTCAACAAACACCTAATTTTGGTCGCGATGATAGCCCATTTGGTAATTCAAATCCAATGGATATCTCAGAT
GACGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2UEH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.195

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.471

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.242

0.37