Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   N2A93_RS07920 Genome accession   NZ_CP104046
Coordinates   1558578..1559882 (-) Length   434 a.a.
NCBI ID   WP_003107488.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553578..1564882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A93_RS07910 (N2A93_07910) hpf 1557294..1557842 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  N2A93_RS07915 (N2A93_07915) - 1557917..1558588 (-) 672 WP_037622055.1 ComF family protein -
  N2A93_RS07920 (N2A93_07920) comFA/cflA 1558578..1559882 (-) 1305 WP_003107488.1 DEAD/DEAH box helicase Machinery gene
  N2A93_RS07925 (N2A93_07925) - 1559939..1560571 (+) 633 WP_003107489.1 YigZ family protein -
  N2A93_RS07930 (N2A93_07930) cysK 1560694..1561623 (+) 930 WP_003103108.1 cysteine synthase A -
  N2A93_RS07935 (N2A93_07935) - 1561699..1562052 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  N2A93_RS07940 (N2A93_07940) - 1562052..1563452 (-) 1401 WP_003107491.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  N2A93_RS07945 (N2A93_07945) - 1563486..1564127 (-) 642 WP_003107492.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49731.74 Da        Isoelectric Point: 9.6231

>NTDB_id=727260 N2A93_RS07920 WP_003107488.1 1558578..1559882(-) (comFA/cflA) [Streptococcus parauberis strain KSP14]
MGKNYYEQGRLFTEQQMKNVITAKTFSMKESMSMESGKQCCNRCFQEVAKTNLLPNGKTYCRFCIAFGRVESESQLYYFA
PQAFPKGDYLRWNGQLTPYQEKISEFLLGNYLNKKNSLVHAVTGVGKTEMIYKLIESVINQGGWVCFTSPRVDVCIDIKN
RLVRDFSCPITIMYGGSEEYRPAPLIVSTTHQLLKFYRAFDLLIIDEVDAFPFLGNVVLNKATQSCLKEEGKVVCLTATS
TNELEQKVSDGHYEKIRLSRRFHNHPLVVPKFQLIYPLSKQFEKNKFPNLLSNLISQQRQTAFPLLIFYPLITEGEKFTK
ILQKAFPKEKIAFVSSKSDDRKEKIDAFKKRQIDILVTTTILERGVTFPEVDVYVILANHKLFTSSSLIQIAGRVGRSVS
RPSGQLLFIHEGVSLQMKKARKQIIEMNKEAYGE

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=727260 N2A93_RS07920 WP_003107488.1 1558578..1559882(-) (comFA/cflA) [Streptococcus parauberis strain KSP14]
ATGGGAAAAAATTATTATGAACAAGGTCGACTTTTTACTGAACAACAAATGAAAAATGTGATAACTGCGAAAACTTTTTC
CATGAAAGAAAGTATGAGTATGGAGTCTGGTAAGCAATGTTGCAATAGATGTTTTCAAGAAGTTGCTAAAACTAATCTTT
TACCTAATGGGAAGACATATTGTAGATTTTGTATTGCCTTTGGTCGGGTGGAATCTGAATCACAACTCTATTATTTTGCA
CCTCAAGCATTTCCGAAAGGTGATTATTTACGCTGGAATGGTCAACTAACCCCATATCAAGAAAAAATTTCAGAATTTTT
GTTAGGCAATTATCTTAATAAAAAAAACAGCTTAGTCCATGCTGTGACAGGTGTTGGAAAAACAGAAATGATATATAAAT
TAATTGAATCAGTAATCAATCAAGGTGGCTGGGTCTGTTTTACTAGTCCCCGAGTAGATGTCTGTATTGATATCAAAAAT
CGTTTAGTTCGAGACTTCTCTTGCCCAATAACAATTATGTATGGAGGGTCCGAGGAATATCGTCCAGCTCCCTTGATAGT
TTCAACAACACATCAACTCTTAAAATTTTATCGAGCCTTTGATTTATTAATAATAGATGAAGTTGATGCTTTTCCTTTTT
TAGGGAATGTGGTTCTAAATAAAGCAACACAATCATGTTTAAAAGAGGAAGGTAAAGTTGTTTGTCTGACTGCGACTTCG
ACAAATGAATTAGAACAAAAAGTCAGCGATGGACATTATGAAAAAATAAGATTGTCAAGACGTTTCCATAATCATCCATT
GGTCGTTCCTAAGTTTCAATTAATTTATCCATTATCAAAACAGTTTGAAAAAAATAAATTTCCTAACTTACTAAGTAATT
TGATTAGTCAACAAAGACAGACTGCATTCCCTTTACTAATTTTCTACCCTCTAATTACAGAAGGGGAAAAATTTACGAAA
ATATTGCAAAAAGCTTTTCCTAAAGAAAAAATTGCCTTTGTATCAAGTAAATCTGATGATCGAAAAGAGAAAATTGATGC
GTTTAAAAAAAGACAAATTGATATTCTTGTAACTACGACTATTTTGGAGAGGGGAGTAACATTTCCAGAAGTAGATGTTT
ACGTTATTTTGGCAAATCATAAGCTATTTACGAGTAGTAGCCTGATTCAGATAGCAGGTCGCGTAGGGAGATCCGTATCT
CGACCAAGTGGGCAGTTACTATTTATTCATGAAGGGGTAAGTCTACAAATGAAGAAAGCTCGTAAACAAATTATAGAAAT
GAATAAGGAAGCATATGGTGAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(95-207)

Helicase conserved C-terminal domain (Helicase_C)

(289-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

52.817

98.157

0.518
  comFA/cflA Streptococcus pneumoniae D39

52.817

98.157

0.518
  comFA/cflA Streptococcus pneumoniae R6

52.817

98.157

0.518
  comFA/cflA Streptococcus pneumoniae Rx1

52.817

98.157

0.518
  comFA/cflA Streptococcus mitis SK321

52.113

98.157

0.512
  comFA/cflA Streptococcus mitis NCTC 12261

51.408

98.157

0.505
  comFA Lactococcus lactis subsp. cremoris KW2

48.492

91.705

0.445