Detailed information
Bioinformatically predicted
Overview
| Name | clpX | Type | Regulator |
| Locus tag | N2A93_RS04365 | Genome accession | NZ_CP104046 |
| Coordinates | 831266..832495 (+) | Length | 409 a.a. |
| NCBI ID | WP_003103169.1 | Uniprot ID | A0A0E2URT0 |
| Organism | Streptococcus parauberis strain KSP14 | ||
| Function | require for competence development (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 807072..867389 | 831266..832495 | within | 0 |
Gene organization within MGE regions
Location: 807072..867389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2A93_RS04250 (N2A93_04250) | - | 808369..808989 (+) | 621 | WP_037619847.1 | glucosaminidase domain-containing protein | - |
| N2A93_RS04255 (N2A93_04255) | - | 809130..809933 (+) | 804 | WP_003106599.1 | glycoside hydrolase family 73 protein | - |
| N2A93_RS04260 (N2A93_04260) | - | 809993..810514 (+) | 522 | WP_003106600.1 | hypothetical protein | - |
| N2A93_RS04265 (N2A93_04265) | - | 810588..810968 (+) | 381 | WP_003103937.1 | DUF1149 family protein | - |
| N2A93_RS04270 (N2A93_04270) | - | 810968..811816 (+) | 849 | WP_003104962.1 | DegV family protein | - |
| N2A93_RS04275 (N2A93_04275) | dapB | 811834..812601 (+) | 768 | WP_003105813.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| N2A93_RS04280 (N2A93_04280) | - | 812598..813809 (+) | 1212 | WP_003102825.1 | CCA tRNA nucleotidyltransferase | - |
| N2A93_RS04285 (N2A93_04285) | - | 813802..815679 (+) | 1878 | WP_003106601.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| N2A93_RS04290 (N2A93_04290) | - | 815683..816156 (+) | 474 | WP_003105038.1 | GNAT family N-acetyltransferase | - |
| N2A93_RS04295 (N2A93_04295) | - | 816259..817995 (+) | 1737 | WP_003102488.1 | ABC transporter ATP-binding protein | - |
| N2A93_RS04300 (N2A93_04300) | - | 817995..819764 (+) | 1770 | WP_003106602.1 | ABC transporter ATP-binding protein | - |
| N2A93_RS04305 (N2A93_04305) | gdhA | 819895..821241 (+) | 1347 | WP_003106603.1 | NADP-specific glutamate dehydrogenase | - |
| N2A93_RS04310 (N2A93_04310) | - | 821307..821717 (+) | 411 | WP_003106604.1 | peptide deformylase | - |
| N2A93_RS04315 (N2A93_04315) | - | 821755..821940 (-) | 186 | WP_003102863.1 | hypothetical protein | - |
| N2A93_RS04320 (N2A93_04320) | - | 821946..822974 (+) | 1029 | Protein_800 | ABC transporter ATP-binding protein | - |
| N2A93_RS04325 (N2A93_04325) | mvk | 823137..824015 (+) | 879 | WP_003106606.1 | mevalonate kinase | - |
| N2A93_RS04330 (N2A93_04330) | mvaD | 823997..824932 (+) | 936 | WP_003104536.1 | diphosphomevalonate decarboxylase | - |
| N2A93_RS04335 (N2A93_04335) | - | 824933..825934 (+) | 1002 | WP_003104029.1 | phosphomevalonate kinase | - |
| N2A93_RS04340 (N2A93_04340) | fni | 825934..826929 (+) | 996 | WP_003106607.1 | type 2 isopentenyl-diphosphate Delta-isomerase | - |
| N2A93_RS04345 (N2A93_04345) | - | 826992..828275 (-) | 1284 | WP_003106609.1 | hydroxymethylglutaryl-CoA reductase, degradative | - |
| N2A93_RS04350 (N2A93_04350) | - | 828272..829438 (-) | 1167 | WP_003104825.1 | hydroxymethylglutaryl-CoA synthase | - |
| N2A93_RS04355 (N2A93_04355) | - | 829630..830469 (+) | 840 | WP_003106617.1 | thymidylate synthase | - |
| N2A93_RS04360 (N2A93_04360) | - | 830546..831061 (+) | 516 | WP_003106618.1 | dihydrofolate reductase | - |
| N2A93_RS04365 (N2A93_04365) | clpX | 831266..832495 (+) | 1230 | WP_003103169.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | Regulator |
| N2A93_RS04370 (N2A93_04370) | yihA | 832504..833103 (+) | 600 | WP_003106619.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| N2A93_RS04375 (N2A93_04375) | - | 833268..833933 (+) | 666 | WP_003106620.1 | hypothetical protein | - |
| N2A93_RS04380 (N2A93_04380) | clpC | 833956..836064 (-) | 2109 | WP_003105519.1 | AAA family ATPase | Regulator |
| N2A93_RS04385 (N2A93_04385) | rplJ | 836515..837015 (+) | 501 | WP_003104757.1 | 50S ribosomal protein L10 | - |
| N2A93_RS04390 (N2A93_04390) | rplL | 837081..837446 (+) | 366 | WP_003103838.1 | 50S ribosomal protein L7/L12 | - |
| N2A93_RS04400 (N2A93_04400) | - | 838135..838989 (+) | 855 | WP_003106628.1 | replication initiator protein A | - |
| N2A93_RS04405 (N2A93_04405) | - | 838986..839147 (+) | 162 | WP_003104080.1 | hypothetical protein | - |
| N2A93_RS10570 | - | 839544..839630 (+) | 87 | WP_375543854.1 | YSIRK-type signal peptide-containing protein | - |
| N2A93_RS04415 (N2A93_04415) | - | 841047..842609 (+) | 1563 | WP_003106629.1 | hypothetical protein | - |
| N2A93_RS04420 (N2A93_04420) | - | 842696..843070 (+) | 375 | WP_003106630.1 | hypothetical protein | - |
| N2A93_RS04425 (N2A93_04425) | - | 843021..843554 (+) | 534 | WP_003106631.1 | YdbC family protein | - |
| N2A93_RS04430 (N2A93_04430) | - | 843611..843835 (+) | 225 | WP_003104561.1 | hypothetical protein | - |
| N2A93_RS04435 (N2A93_04435) | - | 843856..844587 (+) | 732 | WP_003106632.1 | type IV secretion system protein | - |
| N2A93_RS04440 (N2A93_04440) | - | 844635..844940 (+) | 306 | WP_003106633.1 | hypothetical protein | - |
| N2A93_RS04445 (N2A93_04445) | - | 845014..845364 (+) | 351 | WP_233847601.1 | PrgI family protein | - |
| N2A93_RS04450 (N2A93_04450) | - | 845324..847790 (+) | 2467 | Protein_826 | VirB4-like conjugal transfer ATPase, CD1110 family | - |
| N2A93_RS04455 (N2A93_04455) | - | 847805..850396 (+) | 2592 | WP_259976739.1 | phage tail tip lysozyme | - |
| N2A93_RS04460 (N2A93_04460) | - | 850413..851048 (+) | 636 | WP_003106642.1 | hypothetical protein | - |
| N2A93_RS04465 (N2A93_04465) | - | 851074..851349 (+) | 276 | WP_003104435.1 | hypothetical protein | - |
| N2A93_RS04470 (N2A93_04470) | - | 851333..852196 (+) | 864 | WP_003106643.1 | hypothetical protein | - |
| N2A93_RS04475 (N2A93_04475) | - | 852229..852891 (+) | 663 | WP_003106647.1 | LPXTG cell wall anchor domain-containing protein | - |
| N2A93_RS04480 (N2A93_04480) | - | 852963..853499 (+) | 537 | WP_003103611.1 | hypothetical protein | - |
| N2A93_RS04485 (N2A93_04485) | - | 853500..855332 (+) | 1833 | WP_003106649.1 | VirD4-like conjugal transfer protein, CD1115 family | - |
| N2A93_RS04490 (N2A93_04490) | - | 855407..855733 (+) | 327 | WP_003105373.1 | hypothetical protein | - |
| N2A93_RS04495 (N2A93_04495) | - | 855778..857505 (+) | 1728 | WP_003106651.1 | type IA DNA topoisomerase | - |
| N2A93_RS04500 (N2A93_04500) | - | 857506..861357 (+) | 3852 | WP_003106653.1 | PBECR4 domain-containing protein | - |
| N2A93_RS04505 (N2A93_04505) | - | 861422..861682 (+) | 261 | WP_003103735.1 | hypothetical protein | - |
| N2A93_RS04510 (N2A93_04510) | mobC | 861887..862258 (+) | 372 | WP_003105086.1 | plasmid mobilization relaxosome protein MobC | - |
| N2A93_RS04515 (N2A93_04515) | - | 862262..863905 (+) | 1644 | WP_003106654.1 | helical hairpin domain-containing protein | - |
| N2A93_RS04520 (N2A93_04520) | - | 863967..864101 (+) | 135 | WP_003105827.1 | hypothetical protein | - |
| N2A93_RS04525 (N2A93_04525) | - | 864814..865104 (-) | 291 | WP_003106656.1 | hypothetical protein | - |
| N2A93_RS04530 (N2A93_04530) | - | 865414..865797 (+) | 384 | Protein_842 | type I restriction endonuclease | - |
| N2A93_RS04535 (N2A93_04535) | - | 865960..866415 (+) | 456 | WP_003106658.1 | CopY/TcrY family copper transport repressor | - |
| N2A93_RS04540 (N2A93_04540) | - | 866458..866592 (+) | 135 | WP_142377571.1 | heavy metal-associated domain-containing protein | - |
Sequence
Protein
Download Length: 409 a.a. Molecular weight: 45058.55 Da Isoelectric Point: 4.4670
>NTDB_id=727251 N2A93_RS04365 WP_003103169.1 831266..832495(+) (clpX) [Streptococcus parauberis strain KSP14]
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
MASNRSNEIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEALNQYVVGQDR
AKRALAVAVYNHYKRISYKESRDEEEVELQKSNIMMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQSSRKIDDEASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLSIGDLIQI
LTEPKNALVKQYQALLSYDGVELEFNQEALEAIASKAIDRNTGARGLRSIIEETMLDIMFDIPSQEDITKVIITKEAVSG
DSKPILETA
Nucleotide
Download Length: 1230 bp
>NTDB_id=727251 N2A93_RS04365 WP_003103169.1 831266..832495(+) (clpX) [Streptococcus parauberis strain KSP14]
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
ATGGCAAGTAATCGTAGTAACGAAATCAAGGTTCATTGTTCGTTTTGTGGCAAGAGCCAAGATGAAGTAAAAAAAATTAT
TGCAGGTAACAATGTATTCATTTGTAATGAGTGTGTTGCTTTATCACAAGAAATTATTAAAGAAGAATTAGCTGAAGAAG
TCTTGGCTGATTTGACTGAAGTTCCAAAACCAAAAGAACTTTTAGAAGCTTTAAATCAATATGTAGTCGGTCAAGATCGT
GCTAAACGTGCCTTAGCTGTTGCAGTCTATAATCATTACAAACGGATTTCATATAAAGAAAGCCGTGATGAAGAAGAAGT
GGAACTCCAAAAATCAAATATCATGATGATTGGTCCTACTGGTTCTGGTAAGACTTTCCTAGCTCAAACCTTGGCAAAAA
GCTTAAATGTTCCTTTTGCAATCGCTGACGCTACATCTTTGACAGAAGCTGGATATGTAGGTGAAGACGTTGAGAACATT
CTTTTAAAACTGATCCAAGCAGCGGATTACAATGTTGAACGAGCTGAGCGTGGGATCATTTATGTTGATGAGATTGATAA
AATCGCTAAAAAAGGCGAAAATATGTCAATCACTCGTGATGTTTCAGGTGAAGGTGTCCAACAAGCTTTGCTGAAAATTA
TTGAAGGTACAGTAGCTAGTGTTCCACCACAAGGTGGACGCAAACATCCTAACCAAGAAATGATTCAAATCGATACCAAG
AATATTTTGTTTATCGTTGGTGGTGCTTTTGATGGCATTGAAGAAATTGTTAAACAACGTCTTGGTGAAAAGATTATTGG
TTTTGGTCAAAGTAGTCGTAAGATTGATGATGAAGCCTCATATATGCAAGAAATTATTGCTGAAGATATTCAAAAATTTG
GTTTAATTCCCGAATTTATTGGGCGTTTACCTGTCGTAGCCGCTTTGGAACAGTTATCAATTGGCGATTTAATTCAGATT
CTGACTGAACCAAAAAATGCCTTGGTCAAACAATATCAAGCTTTATTATCATATGATGGTGTTGAACTTGAATTTAATCA
AGAAGCTCTTGAAGCCATTGCTTCAAAAGCGATAGACCGTAATACTGGTGCGCGTGGTTTAAGATCAATTATTGAAGAAA
CCATGTTAGATATCATGTTTGATATACCTAGCCAGGAAGATATTACTAAGGTAATTATTACAAAAGAAGCCGTTTCTGGA
GATAGTAAACCTATCTTAGAAACTGCATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpX | Streptococcus mutans UA159 |
86.797 |
100 |
0.868 |
| clpX | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
56.359 |
98.044 |
0.553 |